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Mutant Information

Mutant Name	FN2660-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2660-S-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19027873	G-A	HET	INTERGENIC
SBS	Chr1	19737218	T-C	HET	INTERGENIC
SBS	Chr1	28068264	G-A	HET	INTERGENIC
SBS	Chr1	29329544	T-C	HET	INTRON
SBS	Chr1	32063713	T-A	HOMO	INTERGENIC
SBS	Chr2	18885656	G-A	HOMO	INTERGENIC
SBS	Chr3	13326217	C-A	HOMO	INTRON
SBS	Chr3	16849124	G-T	HET	INTRON
SBS	Chr3	23835002	A-G	HET	INTERGENIC
SBS	Chr3	28369561	C-T	HET	INTERGENIC
SBS	Chr3	33256877	G-A	HET	INTRON
SBS	Chr4	1367334	C-A	HET	INTRON
SBS	Chr4	7420905	C-T	HOMO	INTRON
SBS	Chr4	12638042	T-A	HOMO	INTERGENIC
SBS	Chr4	19428291	C-G	HOMO	INTERGENIC
SBS	Chr5	9019343	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15970
SBS	Chr5	14062997	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24300
SBS	Chr5	16823315	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	24963282	T-C	HET	INTERGENIC
SBS	Chr5	24963283	A-T	HET	INTERGENIC
SBS	Chr6	15262705	C-T	HET	INTERGENIC
SBS	Chr7	4486523	T-C	HET	INTRON
SBS	Chr7	4486524	C-T	HET	INTRON
SBS	Chr7	8139444	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	10608441	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17930
SBS	Chr7	18909743	C-A	HET	INTERGENIC
SBS	Chr8	12696462	T-C	HOMO	INTERGENIC
SBS	Chr8	14518896	G-T	HET	INTERGENIC
SBS	Chr8	19492637	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	20626123	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33160
SBS	Chr8	22564733	G-T	HET	INTERGENIC
SBS	Chr8	25750222	T-C	HET	INTRON
SBS	Chr8	26581080	G-A	HET	INTERGENIC
SBS	Chr9	6591940	G-A	HOMO	INTERGENIC
SBS	Chr9	6591942	A-T	HOMO	INTERGENIC
SBS	Chr9	11260000	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g18360
SBS	Chr9	11260005	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g18360
SBS	Chr9	14621063	G-A	HOMO	INTERGENIC
SBS	Chr9	19074656	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g31970
SBS	Chr10	8726525	C-T	HET	INTERGENIC
SBS	Chr11	21798356	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36950
SBS	Chr11	24774111	C-T	HET	INTERGENIC
SBS	Chr12	248452	G-A	HET	INTERGENIC
SBS	Chr12	10915341	G-A	HET	INTERGENIC
SBS	Chr12	14430760	G-A	HET	INTERGENIC
SBS	Chr12	14948404	G-A	HET	INTERGENIC
SBS	Chr12	15043437	C-G	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	507903	507904	1
Deletion	Chr5	562189	562193	4
Deletion	Chr2	2491818	2491823	5
Deletion	Chr10	3606127	3606134	7
Deletion	Chr5	3648026	3648040	14	LOC_Os05g06970
Deletion	Chr5	4409638	4409639	1
Deletion	Chr5	4492760	4492770	10
Deletion	Chr9	5755891	5755892	1
Deletion	Chr10	9215489	9215496	7
Deletion	Chr11	15191495	15191496	1	LOC_Os11g26500
Deletion	Chr8	17922675	17922699	24
Deletion	Chr11	19552343	19552344	1	LOC_Os11g33070
Deletion	Chr4	26431561	26431563	2
Deletion	Chr12	26860186	26860187	1
Deletion	Chr1	30257001	30349000	91999	12
Deletion	Chr2	34850036	34850038	2
Deletion	Chr3	35090458	35090461	3

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12883923	12883924	2
Insertion	Chr2	4666999	4667002	4
Insertion	Chr6	3255931	3255932	2
Insertion	Chr8	14390042	14390043	2
Insertion	Chr8	28224105	28224106	2
Insertion	Chr3	6532810	6532811	2
Insertion	Chr3	8231561	8231561	1
Insertion	Chr4	17443250	17443306	57
Insertion	Chr5	10007414	10007414	1
Insertion	Chr5	12293134	12293134	1
Insertion	Chr5	12952156	12952156	1
Insertion	Chr7	20457901	20457904	4
Insertion	Chr7	24240082	24240112	31
Insertion	Chr8	4159028	4159028	1
Insertion	Chr8	6625992	6625997	6
Insertion	Chr8	6636000	6636000	1
Insertion	Chr8	6973635	6973636	2
Insertion	Chr8	17910649	17910654	6
Insertion	Chr9	9485176	9485205	30
Insertion	Chr11	15578811	15578816	6
Insertion	Chr11	15906367	15906384	18
Insertion	Chr11	16724958	16724966	9
Insertion	Chr11	25113040	25113045	6
Insertion	Chr12	4414775	4414814	40
Insertion	Chr12	6019907	6019907	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11372582	11372758

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	2071700	Chr1	1500226	LOC_Os01g03640
Translocation	Chr10	3669339	Chr4	33407149
Translocation	Chr2	7954238	Chr1	15637503
Translocation	Chr7	10136799	Chr2	30553950
Translocation	Chr7	10140869	Chr2	30553874
Translocation	Chr12	13410062	Chr11	19402557
Translocation	Chr11	13708389	Chr6	11097874	LOC_Os11g24120
Translocation	Chr11	27437891	Chr7	25323788
Translocation	Chr3	30923708	Chr1	22551039

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