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| Mutant Information |
|---|
| Mutant Name | FN2661-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2661-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 42
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13545895 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g24040 |
| SBS | Chr1 | 19047915 | A-G | HET | ||
| SBS | Chr1 | 37183017 | G-T | Homo | ||
| SBS | Chr1 | 6349261 | C-T | HET | ||
| SBS | Chr10 | 13679096 | C-A | HET | ||
| SBS | Chr10 | 22854623 | C-A | HET | ||
| SBS | Chr10 | 7652730 | G-A | HET | ||
| SBS | Chr10 | 9435241 | A-T | HET | ||
| SBS | Chr11 | 17960685 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g30850 |
| SBS | Chr11 | 23002125 | T-A | Homo | ||
| SBS | Chr11 | 24686495 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41180 |
| SBS | Chr11 | 24686496 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41180 |
| SBS | Chr11 | 24686508 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41180 |
| SBS | Chr11 | 3618149 | T-A | Homo | ||
| SBS | Chr11 | 8635998 | G-A | HET | ||
| SBS | Chr11 | 8783850 | A-C | HET | ||
| SBS | Chr12 | 1201890 | A-C | Homo | ||
| SBS | Chr12 | 3540968 | T-C | Homo | ||
| SBS | Chr12 | 7473769 | G-A | Homo | ||
| SBS | Chr2 | 15373081 | G-A | HET | ||
| SBS | Chr3 | 29523171 | G-A | HET | ||
| SBS | Chr3 | 33285713 | T-G | HET | ||
| SBS | Chr4 | 17637119 | C-T | HET | ||
| SBS | Chr4 | 1836432 | T-C | Homo | ||
| SBS | Chr4 | 20656550 | G-A | HET | ||
| SBS | Chr4 | 26395625 | T-A | Homo | ||
| SBS | Chr5 | 19075320 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32580 |
| SBS | Chr5 | 24960088 | T-C | HET | ||
| SBS | Chr5 | 26695763 | A-G | HET | ||
| SBS | Chr6 | 11065532 | T-C | HET | ||
| SBS | Chr6 | 16753820 | A-G | Homo | ||
| SBS | Chr6 | 6479071 | A-T | HET | ||
| SBS | Chr6 | 6479072 | C-T | HET | ||
| SBS | Chr6 | 9365551 | C-T | HET | ||
| SBS | Chr7 | 1250835 | G-A | HET | ||
| SBS | Chr7 | 17315477 | G-A | HET | ||
| SBS | Chr8 | 26016603 | C-T | HET | ||
| SBS | Chr8 | 3266468 | C-T | HET | ||
| SBS | Chr9 | 18589761 | G-T | HET | ||
| SBS | Chr9 | 18589762 | C-T | HET | ||
| SBS | Chr9 | 22151099 | G-A | HET | ||
| SBS | Chr9 | 3493491 | A-T | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1063917 | 1063937 | 20 | LOC_Os12g02900 |
| Deletion | Chr4 | 1226852 | 1226858 | 6 | |
| Deletion | Chr3 | 3595001 | 3642000 | 46999 | 8 |
| Deletion | Chr2 | 4601499 | 4601506 | 7 | |
| Deletion | Chr4 | 9283415 | 9283416 | 1 | LOC_Os04g16950 |
| Deletion | Chr1 | 9622014 | 9622021 | 7 | LOC_Os01g16850 |
| Deletion | Chr3 | 15524152 | 15524154 | 2 | |
| Deletion | Chr6 | 20927480 | 20927484 | 4 | |
| Deletion | Chr11 | 24740711 | 24740737 | 26 | LOC_Os11g41270 |
| Deletion | Chr8 | 24855057 | 24855071 | 14 | LOC_Os08g39330 |
| Deletion | Chr8 | 25236241 | 25236242 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 35486289 | 35486289 | 1 | |
| Insertion | Chr9 | 19095800 | 19095819 | 20 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 6278539 | 6462357 | LOC_Os05g11140 |
| Inversion | Chr5 | 6278560 | 6462360 | LOC_Os05g11140 |
| Inversion | Chr4 | 32240786 | 32939701 | LOC_Os04g54110 |
| Inversion | Chr4 | 32240797 | 32939713 | LOC_Os04g54110 |
No Translocation