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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13545895	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24040
SBS	Chr1	29310460	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51010
SBS	Chr1	37183017	G-T	HOMO	INTRON
SBS	Chr10	13679096	C-A	HET	INTRON
SBS	Chr10	22854623	C-A	HET	INTERGENIC
SBS	Chr10	4202020	G-A	HET	INTERGENIC
SBS	Chr10	7652730	G-A	HET	INTERGENIC
SBS	Chr10	9435241	A-T	HET	INTERGENIC
SBS	Chr11	10234392	G-T	HET	INTERGENIC
SBS	Chr11	16402640	A-T	HET	INTERGENIC
SBS	Chr11	20168091	A-T	HET	INTERGENIC
SBS	Chr11	23002125	T-A	HOMO	INTERGENIC
SBS	Chr11	3618149	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	8635998	G-A	HET	INTERGENIC
SBS	Chr11	8783850	A-C	HET	INTERGENIC
SBS	Chr12	11519557	A-C	HET	INTERGENIC
SBS	Chr12	1201890	A-C	HOMO	UTR_5_PRIME
SBS	Chr12	23787979	T-A	HET	INTERGENIC
SBS	Chr12	3540968	T-C	HOMO	INTERGENIC
SBS	Chr12	7473769	G-A	HOMO	INTERGENIC
SBS	Chr3	29523171	G-A	HET	INTERGENIC
SBS	Chr3	33285713	T-G	HET	INTERGENIC
SBS	Chr4	17637119	C-T	HET	INTRON
SBS	Chr4	1836432	T-C	HOMO	INTRON
SBS	Chr4	26395625	T-A	HOMO	INTERGENIC
SBS	Chr5	19075320	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g32580
SBS	Chr5	26695763	A-G	HET	INTRON
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr5	7724375	C-T	HET	INTERGENIC
SBS	Chr6	16753820	A-G	HOMO	INTERGENIC
SBS	Chr7	14156455	G-A	HET	INTERGENIC
SBS	Chr7	17315477	G-A	HET	INTERGENIC
SBS	Chr8	18802709	G-T	HET	INTRON
SBS	Chr8	26016603	C-T	HET	INTERGENIC
SBS	Chr8	8049933	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	18589761	G-T	HET	INTERGENIC
SBS	Chr9	18589762	C-T	HET	INTERGENIC
SBS	Chr9	3493491	A-T	HET	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	575583	575585	2
Deletion	Chr12	1063917	1063937	20	LOC_Os12g02900
Deletion	Chr4	1226852	1226858	6
Deletion	Chr8	2052119	2052120	1
Deletion	Chr8	2705801	2705804	3	LOC_Os08g05180
Deletion	Chr12	2978714	2978722	8
Deletion	Chr3	3595001	3641000	45999	8
Deletion	Chr2	4601499	4601506	7
Deletion	Chr10	7671058	7671061	3
Deletion	Chr9	8061542	8061543	1
Deletion	Chr7	8275735	8275736	1
Deletion	Chr11	8893815	8893863	48	LOC_Os11g15690
Deletion	Chr6	8926385	8926386	1
Deletion	Chr4	9283415	9283416	1	LOC_Os04g16950
Deletion	Chr1	9622014	9622021	7	LOC_Os01g16850
Deletion	Chr5	9951669	9951671	2
Deletion	Chr8	12514536	12514537	1
Deletion	Chr2	12916297	12916303	6
Deletion	Chr11	13791019	13791036	17
Deletion	Chr9	13792878	13792880	2
Deletion	Chr5	13812545	13812580	35
Deletion	Chr1	14574548	14574550	2	LOC_Os01g25710
Deletion	Chr3	15524152	15524154	2
Deletion	Chr11	17500043	17500046	3
Deletion	Chr5	17562409	17562439	30
Deletion	Chr4	18132441	18132442	1
Deletion	Chr3	18947478	18947481	3
Deletion	Chr6	20927480	20927484	4
Deletion	Chr8	22576556	22576557	1
Deletion	Chr11	24686500	24686502	2	LOC_Os11g41180
Deletion	Chr11	24740711	24740737	26	LOC_Os11g41270
Deletion	Chr8	24855057	24855071	14	LOC_Os08g39330
Deletion	Chr8	25236241	25236242	1
Deletion	Chr12	25734842	25734843	1
Deletion	Chr8	26105604	26105605	1
Deletion	Chr1	36116743	36116744	1

Insertions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31019728	31019728	1
Insertion	Chr1	871582	871591	10
Insertion	Chr10	15537597	15537597	1
Insertion	Chr10	2239293	2239340	48
Insertion	Chr10	5144804	5144805	2
Insertion	Chr11	13327713	13327713	1
Insertion	Chr11	3058725	3058725	1
Insertion	Chr12	10729497	10729527	31
Insertion	Chr12	18215775	18215776	2
Insertion	Chr2	16495023	16495023	1
Insertion	Chr2	20207445	20207445	1
Insertion	Chr2	23475478	23475478	1
Insertion	Chr2	34738868	34738883	16
Insertion	Chr3	22759606	22759617	12
Insertion	Chr4	11974491	11974491	1
Insertion	Chr4	17622261	17622308	48
Insertion	Chr4	8749036	8749036	1
Insertion	Chr4	9997072	9997111	40
Insertion	Chr5	29932065	29932065	1
Insertion	Chr5	9941426	9941426	1
Insertion	Chr6	19903339	19903348	10
Insertion	Chr6	21385147	21385147	1
Insertion	Chr7	7882486	7882486	1
Insertion	Chr9	7340127	7340129	3	LOC_Os09g12790

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr5	6278539	6462357
Inversion	Chr5	6278560	6462360
Inversion	Chr4	32240786	32939701
Inversion	Chr4	32240797	32939713

Translocations: 25

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2109751	Chr9	9468878	LOC_Os12g04910
Translocation	Chr9	6382652	Chr7	6237696
Translocation	Chr12	8221232	Chr4	3485782	LOC_Os12g14420
Translocation	Chr8	8505944	Chr3	2897018
Translocation	Chr12	10482998	Chr7	29118623	LOC_Os07g48630
Translocation	Chr4	13171073	Chr1	8783373
Translocation	Chr12	13373658	Chr4	12545953	LOC_Os04g22130
Translocation	Chr6	13713679	Chr2	2393042
Translocation	Chr8	14577417	Chr6	8968045
Translocation	Chr8	15765978	Chr3	15248058	LOC_Os03g26704
Translocation	Chr8	18074315	Chr1	18737653	LOC_Os01g34040
Translocation	Chr6	18279856	Chr4	8850351
Translocation	Chr12	19105199	Chr3	14531802
Translocation	Chr8	20135723	Chr1	2999832
Translocation	Chr12	20502586	Chr8	1952438
Translocation	Chr11	22159796	Chr8	10137906	LOC_Os11g37540
Translocation	Chr11	22532797	Chr5	5767258	LOC_Os05g10590
Translocation	Chr7	23277372	Chr3	13642981
Translocation	Chr12	23803678	Chr3	22077710
Translocation	Chr4	26106170	Chr1	10836412
Translocation	Chr4	27007922	Chr2	28383914
Translocation	Chr12	27039704	Chr2	7526584
Translocation	Chr11	27688464	Chr5	23584250	LOC_Os05g40150
Translocation	Chr11	27757035	Chr4	3131208
Translocation	Chr6	28538073	Chr3	15949972

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