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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28124056	G-A	HET	INTERGENIC
SBS	Chr1	40089933	C-G	HET	INTERGENIC
SBS	Chr10	16297997	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31130
SBS	Chr10	7899135	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	7899136	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g15079
SBS	Chr11	21009832	A-C	HET	INTRON
SBS	Chr11	21548515	T-A	HET	INTERGENIC
SBS	Chr11	21700850	C-T	HET	INTERGENIC
SBS	Chr11	21700854	G-T	HET	INTERGENIC
SBS	Chr12	14298373	C-T	HOMO	INTERGENIC
SBS	Chr12	21554003	A-T	HOMO	INTERGENIC
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC
SBS	Chr2	4353988	C-T	HET	INTERGENIC
SBS	Chr2	9767386	C-T	HET	INTRON
SBS	Chr3	13073337	G-A	HET	INTERGENIC
SBS	Chr3	13257933	G-A	HET	INTERGENIC
SBS	Chr3	28777327	G-T	HOMO	INTERGENIC
SBS	Chr3	33589632	G-T	HOMO	INTERGENIC
SBS	Chr4	16395076	G-T	HET	INTERGENIC
SBS	Chr4	17135403	G-A	HET	INTERGENIC
SBS	Chr4	17138586	A-G	HET	INTRON
SBS	Chr4	24198392	C-A	HET	INTERGENIC
SBS	Chr4	29809959	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49970
SBS	Chr4	29809960	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49970
SBS	Chr4	407861	T-C	HOMO	INTERGENIC
SBS	Chr5	16181265	G-A	HOMO	INTERGENIC
SBS	Chr6	11197781	T-A	HET	INTERGENIC
SBS	Chr6	11197782	A-T	HET	INTERGENIC
SBS	Chr6	16565115	C-T	HET	INTRON
SBS	Chr6	20008881	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34380
SBS	Chr6	22308469	C-T	HET	INTRON
SBS	Chr6	24593113	C-G	HET	INTERGENIC
SBS	Chr6	25801440	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42940
SBS	Chr7	16445403	C-T	HOMO	INTERGENIC
SBS	Chr8	5169462	G-T	HOMO	INTRON
SBS	Chr9	10813054	C-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3679914	3679915	1
Deletion	Chr9	5503737	5503739	2
Deletion	Chr10	5961525	5961551	26
Deletion	Chr10	7793656	7793657	1
Deletion	Chr4	8143895	8143916	21
Deletion	Chr8	8368102	8368106	4
Deletion	Chr4	9253948	9253949	1
Deletion	Chr7	10592581	10592601	20	LOC_Os07g17900
Deletion	Chr5	10658231	10658232	1
Deletion	Chr11	11136043	11136049	6
Deletion	Chr5	12028165	12028166	1
Deletion	Chr12	12046496	12046497	1
Deletion	Chr9	12707001	12788000	80999	11
Deletion	Chr9	12956001	12974000	17999	3
Deletion	Chr3	13391047	13391099	52
Deletion	Chr7	13525080	13525109	29
Deletion	Chr1	14433004	14433010	6
Deletion	Chr7	15062982	15062985	3
Deletion	Chr8	15070088	15070091	3
Deletion	Chr8	15171857	15171948	91
Deletion	Chr12	15273673	15273674	1
Deletion	Chr12	15590496	15590511	15
Deletion	Chr10	16256491	16256495	4
Deletion	Chr8	16311064	16311065	1
Deletion	Chr2	16765142	16765206	64
Deletion	Chr1	20899033	20899061	28
Deletion	Chr1	22222800	22222811	11
Deletion	Chr11	22759001	22774000	14999	3
Deletion	Chr12	24603768	24603769	1
Deletion	Chr6	26837998	26838004	6
Deletion	Chr2	30444522	30444524	2
Deletion	Chr2	31215577	31215582	5

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	28306762	28306762	1
Insertion	Chr10	6269739	6269746	8
Insertion	Chr10	7911535	7911535	1
Insertion	Chr11	17989032	17989034	3
Insertion	Chr12	8690373	8690373	1
Insertion	Chr2	11801579	11801582	4
Insertion	Chr2	1897728	1897728	1
Insertion	Chr2	29911017	29911021	5
Insertion	Chr4	11369937	11369962	26	LOC_Os04g20320
Insertion	Chr5	17268170	17268171	2
Insertion	Chr5	21261776	21261776	1
Insertion	Chr5	22010741	22010741	1
Insertion	Chr6	18648236	18648236	1	LOC_Os06g32060
Insertion	Chr6	18868762	18868762	1
Insertion	Chr6	24853989	24853994	6
Insertion	Chr6	30512994	30512994	1
Insertion	Chr7	11760565	11760633	69
Insertion	Chr9	2202998	2203077	80
Insertion	Chr9	939763	939763	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22758949	22759643
Inversion	Chr11	22758954	22803939

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3435329	Chr10	467566
Translocation	Chr9	3882032	Chr6	13458673
Translocation	Chr8	5063863	Chr6	3022426
Translocation	Chr7	13124828	Chr6	17429689	LOC_Os07g23290
Translocation	Chr11	18336032	Chr1	9105360
Translocation	Chr6	21366309	Chr5	18202453
Translocation	Chr11	27850864	Chr1	3225365	2

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