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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11167046	T-C	HET	UTR_5_PRIME
SBS	Chr1	32302099	A-C	HET	INTRON
SBS	Chr1	9851622	T-A	HET	INTERGENIC
SBS	Chr10	17398030	G-A	HET	INTERGENIC
SBS	Chr10	17398031	A-G	HET	INTERGENIC
SBS	Chr10	22949865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42570
SBS	Chr10	6432685	G-A	HOMO	INTRON
SBS	Chr11	26034302	T-C	HET	INTERGENIC
SBS	Chr11	28340747	C-T	HET	INTRON
SBS	Chr11	7212697	T-C	HET	INTERGENIC
SBS	Chr11	8293732	A-G	HET	INTERGENIC
SBS	Chr12	5133230	C-A	HET	INTRON
SBS	Chr2	22742246	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	27429010	G-A	HET	INTERGENIC
SBS	Chr2	32513178	G-T	HET	INTERGENIC
SBS	Chr2	32614635	C-T	HET	INTERGENIC
SBS	Chr2	33056602	A-T	HET	INTRON
SBS	Chr3	16623311	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g29224
SBS	Chr4	6734281	A-T	HET	INTERGENIC
SBS	Chr4	6734282	C-T	HET	INTERGENIC
SBS	Chr5	10951862	C-T	HET	INTERGENIC
SBS	Chr5	6823938	A-T	HET	INTERGENIC
SBS	Chr6	30720070	C-T	HOMO	INTERGENIC
SBS	Chr6	8535685	T-G	HOMO	INTRON
SBS	Chr7	6087038	A-C	HET	INTERGENIC
SBS	Chr8	18795157	C-T	HOMO	INTERGENIC
SBS	Chr8	21265259	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g33960

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2324803	2324832	29
Deletion	Chr11	3867206	3867208	2
Deletion	Chr9	5127718	5127764	46
Deletion	Chr7	5432815	5432867	52
Deletion	Chr8	5871009	5871012	3	LOC_Os08g10120
Deletion	Chr10	6927113	6927202	89	LOC_Os10g12450
Deletion	Chr5	10747274	10747275	1	LOC_Os05g18560
Deletion	Chr6	10998958	10998959	1
Deletion	Chr4	15166736	15166738	2
Deletion	Chr1	16978784	16978785	1
Deletion	Chr9	18957063	18957071	8
Deletion	Chr7	21727001	21736000	8999	LOC_Os07g36360
Deletion	Chr7	21740001	21766000	25999	4
Deletion	Chr2	25862001	25891000	28999	4
Deletion	Chr6	26448181	26448186	5
Deletion	Chr12	27056762	27056772	10	LOC_Os12g43590
Deletion	Chr4	28699585	28699589	4
Deletion	Chr4	30565172	30565180	8
Deletion	Chr4	32198001	32209000	10999	4
Deletion	Chr1	38942486	38942497	11

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17159534	17159565	32
Insertion	Chr1	4802823	4802830	8
Insertion	Chr2	471775	471775	1
Insertion	Chr3	25435081	25435132	52
Insertion	Chr4	31607932	31607932	1
Insertion	Chr4	35495935	35495936	2
Insertion	Chr5	18968676	18968734	59
Insertion	Chr6	24551280	24551281	2
Insertion	Chr9	5964983	5965023	41

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	634833	Chr2	17757429	LOC_Os06g02130
Translocation	Chr12	15321139	Chr11	16186543
Translocation	Chr6	16817203	Chr1	29886748
Translocation	Chr4	28213450	Chr1	31774263

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