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Mutant Information

Mutant Name	FN2682-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2682-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 65

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11153921	T-C	HET
SBS	Chr1	11153921	T-C	HET	INTERGENIC
SBS	Chr1	17788143	C-T	HET
SBS	Chr1	17788143	C-T	HET	INTERGENIC
SBS	Chr1	20149490	T-C	HET	INTERGENIC
SBS	Chr1	21588752	G-A	HET
SBS	Chr1	21588752	G-A	HET	INTRON
SBS	Chr1	31065292	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54010
SBS	Chr1	32479365	A-G	HET
SBS	Chr1	32479365	A-G	HET	INTERGENIC
SBS	Chr1	37206277	C-T	HET	INTERGENIC
SBS	Chr1	41546204	C-G	HET	INTERGENIC
SBS	Chr1	9857319	C-T	HET
SBS	Chr10	15840902	G-A	HET	INTERGENIC
SBS	Chr11	14664421	C-T	HET
SBS	Chr11	14664421	C-T	HET	INTRON
SBS	Chr11	19974998	T-C	Homo
SBS	Chr11	19974998	T-C	HOMO	INTRON
SBS	Chr11	27275450	G-C	HET
SBS	Chr11	27275450	G-C	HET	INTERGENIC
SBS	Chr12	15173894	A-G	HET
SBS	Chr12	23989381	G-C	HET
SBS	Chr12	23989381	G-C	HET	INTERGENIC
SBS	Chr12	5152579	T-C	HET
SBS	Chr12	5152579	T-C	HET	INTERGENIC
SBS	Chr2	10154136	T-A	HET
SBS	Chr2	10154136	T-A	HET	INTRON
SBS	Chr2	14649463	A-T	HET	STOP_GAINED	LOC_Os02g25180
SBS	Chr2	5240006	G-A	HET
SBS	Chr2	5240006	G-A	HET	INTRON
SBS	Chr2	7665574	A-T	HET
SBS	Chr2	7665574	A-T	HET	INTERGENIC
SBS	Chr3	20277937	G-A	HET	INTRON
SBS	Chr3	902142	A-T	HET
SBS	Chr3	902142	A-T	HET	INTERGENIC
SBS	Chr3	956984	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g02580
SBS	Chr4	19950274	G-T	HET	INTERGENIC
SBS	Chr4	26360681	G-T	HET	INTERGENIC
SBS	Chr4	26360682	C-T	HET	INTERGENIC
SBS	Chr4	26613156	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g44980
SBS	Chr4	26916884	C-T	HET	INTERGENIC
SBS	Chr4	29972042	T-C	HET	START_GAINED
SBS	Chr4	6334994	C-A	Homo
SBS	Chr4	6334994	C-A	HOMO	INTERGENIC
SBS	Chr4	9947091	C-T	HET	INTRON
SBS	Chr5	25256675	C-T	Homo
SBS	Chr5	25256675	C-T	HOMO	INTRON
SBS	Chr5	8456202	C-T	HET
SBS	Chr5	9618704	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16880
SBS	Chr6	28483092	G-A	HET
SBS	Chr6	28483092	G-A	HET	INTERGENIC
SBS	Chr6	30186036	A-C	HET
SBS	Chr6	7076495	A-G	HET
SBS	Chr7	15016641	C-T	HET	INTERGENIC
SBS	Chr7	2315390	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05190
SBS	Chr7	8233552	C-T	HET
SBS	Chr7	9154157	A-T	HET
SBS	Chr7	9154157	A-T	HET	INTRON
SBS	Chr8	12220572	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20350
SBS	Chr8	28263394	C-A	Homo
SBS	Chr8	28263394	C-A	HOMO	INTERGENIC
SBS	Chr8	3365193	A-G	Homo
SBS	Chr8	3365193	A-G	HOMO	INTERGENIC
SBS	Chr8	4331177	T-C	Homo
SBS	Chr8	4331177	T-C	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1504979	1504980	1
Deletion	Chr8	1790796	1790799	3
Deletion	Chr9	4753131	4753204	73
Deletion	Chr9	5260299	5260300	1	LOC_Os09g09720
Deletion	Chr8	8032297	8032301	4	LOC_Os08g13500
Deletion	Chr9	8926244	8926245	1
Deletion	Chr2	9037203	9037204	1
Deletion	Chr4	9331681	9331697	16
Deletion	Chr2	9353291	9353314	23
Deletion	Chr9	9706659	9706660	1	LOC_Os09g15880
Deletion	Chr9	9735385	9735395	10
Deletion	Chr6	10671820	10671822	2
Deletion	Chr8	11637201	11637260	59
Deletion	Chr11	11937328	11937329	1
Deletion	Chr7	12229807	12229808	1
Deletion	Chr11	14181134	14181152	18
Deletion	Chr1	15695992	15695993	1	2
Deletion	Chr12	19027328	19027354	26
Deletion	Chr6	19294439	19294440	1
Deletion	Chr3	22381645	22381649	4
Deletion	Chr3	25017619	25017622	3
Deletion	Chr8	26700653	26700655	2
Deletion	Chr7	26884706	26884730	24
Deletion	Chr3	30699164	30699168	4
Deletion	Chr2	32441021	32441167	146
Deletion	Chr2	34104776	34104783	7

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13763923	13763923	1
Insertion	Chr1	19729900	19729900	1
Insertion	Chr1	35770112	35770113	2
Insertion	Chr1	9031972	9031972	1
Insertion	Chr10	3923863	3923863	1
Insertion	Chr11	20878309	20878330	22
Insertion	Chr12	11475623	11475623	1
Insertion	Chr12	11484604	11484604	1
Insertion	Chr2	19521372	19521372	1
Insertion	Chr2	27283855	27283855	1
Insertion	Chr3	30924280	30924315	36
Insertion	Chr3	33993649	33993649	1
Insertion	Chr3	7300759	7300759	1
Insertion	Chr4	13737263	13737263	1
Insertion	Chr4	25995558	25995558	1
Insertion	Chr5	29114308	29114309	2
Insertion	Chr5	8116387	8116387	1	LOC_Os05g14400
Insertion	Chr6	29254786	29254787	2
Insertion	Chr7	12164891	12164891	1
Insertion	Chr7	19805571	19805571	1
Insertion	Chr7	26828512	26828512	1
Insertion	Chr9	12792840	12792840	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5959093	6671257
Inversion	Chr12	13377758	13406256	2

Translocations: 17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	339199	Chr5	11351917	LOC_Os05g19530
Translocation	Chr12	2399395	Chr1	32064842	LOC_Os12g05334
Translocation	Chr5	5022236	Chr2	25341897	2
Translocation	Chr10	6900321	Chr5	2479642
Translocation	Chr12	6993479	Chr1	576210
Translocation	Chr8	8928502	Chr6	17497729	2
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr12	13547459	Chr11	22973797	2
Translocation	Chr11	15779026	Chr9	11329565	LOC_Os11g27420
Translocation	Chr8	16263154	Chr6	15882910	2
Translocation	Chr9	19929206	Chr4	26648747	2
Translocation	Chr6	19955775	Chr4	31332668
Translocation	Chr11	22608894	Chr9	11816277
Translocation	Chr11	22773586	Chr3	18629691
Translocation	Chr12	24883607	Chr11	10658313
Translocation	Chr8	25143113	Chr2	24605943
Translocation	Chr11	27827270	Chr6	25897960

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