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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11376339	T-C	HET	INTERGENIC
SBS	Chr1	13479333	G-T	HET	INTRON
SBS	Chr1	15211887	C-T	HET	INTERGENIC
SBS	Chr1	2035816	C-T	HET	INTERGENIC
SBS	Chr1	33773067	C-T	HET	INTERGENIC
SBS	Chr1	35574975	C-A	HET	INTRON
SBS	Chr1	36594298	G-A	HET	INTRON
SBS	Chr10	19209068	C-T	HET	INTERGENIC
SBS	Chr10	557289	C-A	HOMO	SPLICE_SITE_REGION
SBS	Chr10	7955732	C-T	HET	INTRON
SBS	Chr11	28376916	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g47180
SBS	Chr2	14041640	T-C	HET	INTERGENIC
SBS	Chr2	23207238	C-T	HET	INTERGENIC
SBS	Chr2	24053515	C-A	HET	INTERGENIC
SBS	Chr4	14071034	A-G	HET	INTERGENIC
SBS	Chr4	21935240	G-A	HOMO	INTERGENIC
SBS	Chr4	26226628	T-C	HET	INTERGENIC
SBS	Chr4	26276766	G-A	HET	INTERGENIC
SBS	Chr4	26816332	C-T	HET	INTERGENIC
SBS	Chr4	4745373	C-T	HET	INTERGENIC
SBS	Chr4	8200486	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14620
SBS	Chr5	17328	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g00996
SBS	Chr5	21378018	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36080
SBS	Chr5	29615660	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr5	9456321	A-T	HOMO	INTERGENIC
SBS	Chr7	13840115	G-A	HOMO	INTERGENIC
SBS	Chr7	416868	A-T	HET	INTERGENIC
SBS	Chr9	15201658	T-C	HET	INTERGENIC
SBS	Chr9	21767828	C-T	HET	INTERGENIC
SBS	Chr9	3494189	G-C	HET	UTR_3_PRIME
SBS	Chr9	4740882	T-G	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3355055	3355067	12
Deletion	Chr11	4072253	4072254	1
Deletion	Chr10	6336022	6336029	7	LOC_Os10g11454
Deletion	Chr12	9474001	9481000	6999	3
Deletion	Chr1	10782854	10782870	16	LOC_Os01g19080
Deletion	Chr4	11356539	11356540	1
Deletion	Chr9	12466085	12466093	8
Deletion	Chr8	13121535	13121563	28
Deletion	Chr3	13439291	13439294	3	LOC_Os03g23220
Deletion	Chr1	13932806	13932807	1
Deletion	Chr10	14136587	14136588	1
Deletion	Chr6	17882934	17882967	33
Deletion	Chr1	18947170	18947176	6
Deletion	Chr9	20748524	20748525	1
Deletion	Chr3	23665286	23665296	10	LOC_Os03g42530
Deletion	Chr8	24890241	24890242	1
Deletion	Chr6	26199058	26199060	2
Deletion	Chr2	26711159	26711164	5
Deletion	Chr11	28348523	28348524	1
Deletion	Chr3	31409829	31409837	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20503460	20503461	2
Insertion	Chr11	29017066	29017085	20
Insertion	Chr12	21403209	21403210	2
Insertion	Chr3	30834293	30834320	28
Insertion	Chr5	21902733	21902737	5

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8978935	9473711
Inversion	Chr12	11163132	11742186

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr4	3634200	Chr2	4744445
Translocation	Chr12	8983452	Chr3	15237553
Translocation	Chr12	8988724	Chr3	15237589

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