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| Mutant Information |
|---|
| Mutant Name | FN2690-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2690-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12473082 | G-C | HET | ||
| SBS | Chr1 | 15339933 | G-A | Homo | ||
| SBS | Chr1 | 15339934 | A-G | Homo | ||
| SBS | Chr1 | 19135234 | C-T | HET | ||
| SBS | Chr1 | 9073993 | G-A | HET | ||
| SBS | Chr11 | 15013576 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g26220 |
| SBS | Chr11 | 15016129 | A-G | HET | ||
| SBS | Chr11 | 16636570 | T-C | HET | ||
| SBS | Chr11 | 18461806 | G-A | HET | ||
| SBS | Chr11 | 19400890 | C-A | Homo | ||
| SBS | Chr11 | 26096576 | A-G | HET | ||
| SBS | Chr12 | 11042992 | G-A | HET | ||
| SBS | Chr12 | 16086580 | A-C | HET | ||
| SBS | Chr12 | 20079118 | T-C | HET | ||
| SBS | Chr12 | 20410301 | A-G | HET | ||
| SBS | Chr12 | 20757637 | T-C | HET | ||
| SBS | Chr12 | 23779796 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g38710 |
| SBS | Chr2 | 31208867 | C-T | Homo | ||
| SBS | Chr2 | 3320695 | C-A | Homo | ||
| SBS | Chr3 | 1724456 | C-T | HET | ||
| SBS | Chr3 | 2553157 | C-A | Homo | ||
| SBS | Chr3 | 34244973 | C-T | Homo | ||
| SBS | Chr4 | 11366089 | G-T | HET | ||
| SBS | Chr4 | 13004766 | A-G | HET | ||
| SBS | Chr4 | 26540214 | G-A | HET | ||
| SBS | Chr4 | 34146918 | T-A | HET | ||
| SBS | Chr4 | 7562937 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13550 |
| SBS | Chr5 | 14921436 | C-T | HET | ||
| SBS | Chr5 | 20398899 | C-G | Homo | ||
| SBS | Chr5 | 20439552 | A-C | Homo | ||
| SBS | Chr5 | 3963570 | T-C | Homo | ||
| SBS | Chr5 | 487070 | A-G | HET | ||
| SBS | Chr5 | 9714345 | G-A | HET | ||
| SBS | Chr7 | 16575844 | T-C | HET | ||
| SBS | Chr7 | 28705904 | C-T | HET | ||
| SBS | Chr8 | 16382093 | T-A | Homo | ||
| SBS | Chr8 | 4438843 | G-A | HET | ||
| SBS | Chr8 | 7146704 | G-A | HET | ||
| SBS | Chr8 | 9374561 | T-C | HET | ||
| SBS | Chr9 | 15238044 | T-A | HET | ||
| SBS | Chr9 | 4260660 | C-A | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1589900 | 1589902 | 2 | |
| Deletion | Chr12 | 5360001 | 5379000 | 18999 | 5 |
| Deletion | Chr9 | 5382456 | 5382457 | 1 | |
| Deletion | Chr10 | 6272116 | 6272126 | 10 | |
| Deletion | Chr3 | 10222335 | 10222338 | 3 | |
| Deletion | Chr1 | 14102261 | 14102262 | 1 | LOC_Os01g25010 |
| Deletion | Chr5 | 14290285 | 14290286 | 1 | |
| Deletion | Chr9 | 18110548 | 18110550 | 2 | |
| Deletion | Chr11 | 21895403 | 21895404 | 1 | LOC_Os11g37090 |
| Deletion | Chr2 | 23452001 | 23475000 | 22999 | 5 |
| Deletion | Chr11 | 25527122 | 25527124 | 2 | |
| Deletion | Chr2 | 35175899 | 35175900 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 22104942 | 22104946 | 5 | |
| Insertion | Chr12 | 24691399 | 24691399 | 1 | LOC_Os12g39950 |
No Inversion
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4386843 | Chr2 | 15425596 | 2 |
| Translocation | Chr8 | 7455821 | Chr2 | 16612646 | |
| Translocation | Chr12 | 9054629 | Chr2 | 33279525 | 2 |
| Translocation | Chr6 | 10177690 | Chr2 | 13594359 | |
| Translocation | Chr7 | 10656368 | Chr3 | 19428569 | |
| Translocation | Chr6 | 12693574 | Chr1 | 2810071 | LOC_Os06g21950 |
| Translocation | Chr5 | 13717095 | Chr1 | 39001038 | 2 |
| Translocation | Chr5 | 17111026 | Chr3 | 23167836 | 2 |
| Translocation | Chr7 | 17647048 | Chr6 | 22526256 |