Search Nipponbare

Mutant Information

Mutant Name	FN2692-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2692-S-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31231075	G-T	HET	INTERGENIC
SBS	Chr1	36906781	C-T	HET	INTRON
SBS	Chr1	41506225	G-A	HET	INTERGENIC
SBS	Chr1	727322	G-A	HET	INTERGENIC
SBS	Chr11	26050620	A-T	HET	INTRON
SBS	Chr12	9280110	G-A	HET	INTRON
SBS	Chr2	28262906	C-T	HET	INTRON
SBS	Chr3	1685125	G-A	HET	INTERGENIC
SBS	Chr3	18511152	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	35772340	A-T	HET	INTERGENIC
SBS	Chr4	20266309	G-T	HET	INTERGENIC
SBS	Chr4	23931311	G-A	HET	INTERGENIC
SBS	Chr5	21362103	A-T	HET	INTERGENIC
SBS	Chr8	16267836	T-A	HET	INTERGENIC
SBS	Chr8	1899404	G-A	HET	INTERGENIC
SBS	Chr8	4877491	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08460
SBS	Chr9	4455849	C-G	HET	INTRON

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	38001	125000	86999	13
Deletion	Chr9	135001	162000	26999	4
Deletion	Chr9	625001	645000	19999	2
Deletion	Chr4	3210039	3210063	24
Deletion	Chr7	9873810	9873825	15	LOC_Os07g16810
Deletion	Chr10	10900447	10900451	4
Deletion	Chr9	13943001	13981000	37999	5
Deletion	Chr6	18851513	18851515	2
Deletion	Chr7	19796979	19796980	1	LOC_Os07g33150
Deletion	Chr8	20436645	20436647	2
Deletion	Chr5	20477001	20964000	486999	75
Deletion	Chr5	21632001	21662000	29999	5
Deletion	Chr4	26006114	26006118	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13580486	13580487	2
Insertion	Chr1	19910040	19910040	1
Insertion	Chr10	6984004	6984004	1
Insertion	Chr12	23279438	23279451	14
Insertion	Chr3	1041139	1041154	16
Insertion	Chr6	11098499	11098499	1
Insertion	Chr7	16671841	16671842	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	449672	772212	LOC_Os08g01740
Inversion	Chr8	449674	772211	LOC_Os08g01740
Inversion	Chr11	2634920	2635250

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6536316	Chr6	10737074
Translocation	Chr5	9870528	Chr4	15936362