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Mutant Information

Mutant Name	FN2696-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2696-S-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 56

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13907033	C-A	HET	INTERGENIC
SBS	Chr1	20113792	C-T	HOMO	INTRON
SBS	Chr1	42111458	G-T	HOMO	INTERGENIC
SBS	Chr1	5778802	C-T	HET	INTERGENIC
SBS	Chr10	12101135	G-A	HET	INTERGENIC
SBS	Chr10	13147824	A-G	HET	INTERGENIC
SBS	Chr10	16465959	A-T	HET	INTERGENIC
SBS	Chr10	5184816	C-T	HET	INTERGENIC
SBS	Chr10	7352155	C-T	HET	INTERGENIC
SBS	Chr11	10923621	C-G	HET	INTERGENIC
SBS	Chr11	11151639	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19380
SBS	Chr11	18635179	T-C	HET	INTRON
SBS	Chr11	21516732	A-G	HET	INTERGENIC
SBS	Chr11	22839130	C-T	HOMO	INTERGENIC
SBS	Chr11	23523805	T-A	HET	SYNONYMOUS_CODING
SBS	Chr11	26760605	G-A	HET	INTERGENIC
SBS	Chr11	9043345	T-A	HET	INTERGENIC
SBS	Chr12	1057562	T-C	HOMO	INTERGENIC
SBS	Chr12	19323116	C-A	HET	INTERGENIC
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	23980895	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38990
SBS	Chr2	26441635	C-T	HOMO	INTERGENIC
SBS	Chr2	31325573	C-T	HOMO	INTERGENIC
SBS	Chr2	33395675	C-T	HET	INTERGENIC
SBS	Chr2	7852059	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14300
SBS	Chr3	19403080	C-T	HET	INTERGENIC
SBS	Chr3	19673080	G-A	HET	INTERGENIC
SBS	Chr3	32726847	C-T	HET	INTRON
SBS	Chr3	35894073	C-A	HET	UTR_3_PRIME
SBS	Chr3	6573004	C-T	HET	INTERGENIC
SBS	Chr4	17311686	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	20980275	T-G	HET	INTERGENIC
SBS	Chr4	21174321	T-C	HET	INTERGENIC
SBS	Chr4	24208331	A-G	HET	INTRON
SBS	Chr4	2701471	C-T	HET	INTERGENIC
SBS	Chr4	33123656	T-C	HOMO	UTR_3_PRIME
SBS	Chr4	7184219	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13030
SBS	Chr4	9402747	T-A	HET	INTERGENIC
SBS	Chr5	26173739	C-G	HET	INTERGENIC
SBS	Chr6	17232918	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29920
SBS	Chr6	5146983	G-A	HET	INTERGENIC
SBS	Chr6	6250718	C-T	HET	START_GAINED
SBS	Chr6	6382052	A-T	HET	INTERGENIC
SBS	Chr6	7315505	C-T	HET	INTERGENIC
SBS	Chr7	17999662	G-A	HET	INTERGENIC
SBS	Chr7	19574853	C-A	HET	INTRON
SBS	Chr7	19822489	T-C	HET	INTERGENIC
SBS	Chr7	23019879	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38320
SBS	Chr7	24781804	C-A	HET	INTERGENIC
SBS	Chr7	27542539	A-G	HET	INTERGENIC
SBS	Chr7	28111842	A-T	HET	INTERGENIC
SBS	Chr8	12053810	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	5847688	T-A	HET	INTRON
SBS	Chr9	11044317	T-A	HET	INTERGENIC
SBS	Chr9	14289727	G-T	HET	SYNONYMOUS_CODING
SBS	Chr9	397612	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01560

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	61640	61642	2
Deletion	Chr3	1254303	1254395	92
Deletion	Chr5	2512260	2512277	17
Deletion	Chr11	3759779	3759786	7	LOC_Os11g07460
Deletion	Chr2	6243361	6243363	2
Deletion	Chr6	7122001	7225000	102999	19
Deletion	Chr6	7420001	7470000	49999	8
Deletion	Chr7	7460001	7737000	276999	44
Deletion	Chr10	9901085	9901087	2
Deletion	Chr11	10769001	10795000	25999	2
Deletion	Chr2	10926504	10926508	4	LOC_Os02g18730
Deletion	Chr12	13438572	13438589	17
Deletion	Chr10	15261004	15261007	3
Deletion	Chr11	16486271	16486274	3
Deletion	Chr4	16753460	16753461	1
Deletion	Chr2	17543920	17543922	2
Deletion	Chr11	18371658	18371674	16
Deletion	Chr1	18899152	18899153	1
Deletion	Chr12	19083255	19083256	1
Deletion	Chr10	21394825	21394828	3	LOC_Os10g39950
Deletion	Chr4	21834372	21834373	1
Deletion	Chr3	22468673	22468714	41
Deletion	Chr1	22507806	22507807	1
Deletion	Chr4	23197288	23197290	2
Deletion	Chr8	27497074	27497076	2
Deletion	Chr4	28350242	28350244	2
Deletion	Chr1	28378131	28378133	2
Deletion	Chr6	28718710	28718716	6	LOC_Os06g47380
Deletion	Chr1	34049175	34049176	1
Deletion	Chr1	38039606	38039620	14

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15948543	15948550	8
Insertion	Chr12	13152117	13152121	5
Insertion	Chr12	22229058	22229069	12
Insertion	Chr12	26189036	26189049	14
Insertion	Chr2	15397253	15397286	34
Insertion	Chr2	19065392	19065392	1
Insertion	Chr2	32487529	32487530	2
Insertion	Chr2	34141028	34141029	2
Insertion	Chr3	12881950	12881952	3
Insertion	Chr7	11895796	11895803	8
Insertion	Chr7	26517098	26517099	2
Insertion	Chr7	977935	977946	12

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5959093	6671300
Inversion	Chr6	9402720	9403593
Inversion	Chr6	9402854	9403593
Inversion	Chr12	9915303	9954710	LOC_Os12g17320
Inversion	Chr12	9915304	9954712	LOC_Os12g17320
Inversion	Chr7	10392569	10656378

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	392592	Chr6	9402844
Translocation	Chr8	392593	Chr6	9402735

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