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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16925804	A-C	HET	INTERGENIC
SBS	Chr10	701899	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02120
SBS	Chr11	13135299	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	10701689	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18510
SBS	Chr12	13997081	G-A	HET	INTERGENIC
SBS	Chr12	1723128	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	23071238	C-T	HET	INTERGENIC
SBS	Chr12	24308987	G-C	HET	INTERGENIC
SBS	Chr2	23675380	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	31938888	G-A	HOMO	INTERGENIC
SBS	Chr2	7384544	A-G	HET	INTERGENIC
SBS	Chr3	19353980	C-T	HET	INTRON
SBS	Chr4	34823947	T-A	HOMO	INTERGENIC
SBS	Chr5	25455100	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g43780
SBS	Chr6	216931	T-A	HET	INTRON
SBS	Chr6	23778565	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	5907892	G-A	HET	INTERGENIC
SBS	Chr6	6937834	G-T	HOMO	INTERGENIC
SBS	Chr7	13420849	C-A	HET	INTERGENIC
SBS	Chr7	26568546	C-T	HET	INTRON
SBS	Chr7	27218674	T-C	HET	INTRON
SBS	Chr7	6709834	C-T	HET	INTRON
SBS	Chr8	13532362	A-G	HET	INTERGENIC
SBS	Chr8	2219805	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	14113331	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23740
SBS	Chr9	14749538	G-T	HET	INTERGENIC
SBS	Chr9	15394814	C-T	HET	INTERGENIC
SBS	Chr9	22860772	G-A	HOMO	INTERGENIC
SBS	Chr9	8555390	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14470
SBS	Chr9	8555391	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14470

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3608571	3608572	1
Deletion	Chr2	7597207	7597208	1	LOC_Os02g13950
Deletion	Chr2	7982424	7982425	1
Deletion	Chr1	8205028	8205038	10
Deletion	Chr4	9830248	9830249	1	LOC_Os04g17890
Deletion	Chr2	10355001	10394000	38999	7
Deletion	Chr4	12394513	12394516	3	LOC_Os04g21880
Deletion	Chr9	12710852	12710854	2
Deletion	Chr11	13951831	13951838	7
Deletion	Chr3	14160602	14160613	11
Deletion	Chr1	15117764	15117765	1
Deletion	Chr11	15922963	15922966	3	LOC_Os11g27650
Deletion	Chr11	17184190	17184193	3
Deletion	Chr9	22619250	22619264	14	LOC_Os09g39330
Deletion	Chr4	23298544	23298546	2
Deletion	Chr7	24356109	24356113	4

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	17027484	17027486	3
Insertion	Chr11	17738803	17738811	9
Insertion	Chr12	27316818	27316837	20
Insertion	Chr12	6026251	6026264	14
Insertion	Chr4	1612321	1612346	26
Insertion	Chr5	6354928	6354960	33
Insertion	Chr5	7022961	7022972	12
Insertion	Chr8	15064370	15064395	26	LOC_Os08g24880
Insertion	Chr8	7269088	7269088	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7261610	7751677
Inversion	Chr6	7261622	7751688

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	599623	Chr2	10358457
Translocation	Chr8	19690453	Chr6	13904217
Translocation	Chr6	26232667	Chr2	5607366	LOC_Os06g43610
Translocation	Chr6	26232983	Chr2	5607338

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