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Mutant Information

Mutant Name	FN2707-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2707-S-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25737097	G-A	HOMO	INTERGENIC
SBS	Chr1	28566540	A-T	HOMO	INTERGENIC
SBS	Chr1	33236627	C-T	HET	INTERGENIC
SBS	Chr1	40685653	T-A	HOMO	INTERGENIC
SBS	Chr10	11363731	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22010
SBS	Chr10	5486005	T-A	HET	INTERGENIC
SBS	Chr11	15006037	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26200
SBS	Chr11	5302271	C-T	HET	INTERGENIC
SBS	Chr12	8954890	G-T	HOMO	INTRON
SBS	Chr2	14420186	T-C	HET	INTERGENIC
SBS	Chr2	23589382	C-T	HET	INTERGENIC
SBS	Chr2	3021181	A-T	HET	INTERGENIC
SBS	Chr2	33477237	T-G	HET	INTRON
SBS	Chr3	14644109	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25590
SBS	Chr3	15916168	G-A	HET	INTERGENIC
SBS	Chr3	23303977	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	33760213	G-A	HOMO	INTERGENIC
SBS	Chr3	34559932	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g60820
SBS	Chr4	10792584	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	11183593	A-T	HET	INTERGENIC
SBS	Chr4	13007908	T-A	HET	INTERGENIC
SBS	Chr4	1538725	C-T	HET	INTERGENIC
SBS	Chr4	23060186	C-A	HOMO	INTRON
SBS	Chr5	20890610	G-T	HET	INTRON
SBS	Chr5	8555343	C-A	HET	INTERGENIC
SBS	Chr6	11367176	G-C	HET	INTERGENIC
SBS	Chr6	13036320	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22430
SBS	Chr6	8092898	A-G	HET	INTERGENIC
SBS	Chr6	8354613	A-G	HET	INTERGENIC
SBS	Chr7	14026266	C-T	HET	INTERGENIC
SBS	Chr7	14106441	G-C	HET	INTERGENIC
SBS	Chr7	14106442	G-C	HET	INTERGENIC
SBS	Chr7	18518130	T-C	HET	INTERGENIC
SBS	Chr7	29541091	A-G	HET	INTRON
SBS	Chr7	8007347	G-A	HET	INTERGENIC
SBS	Chr7	8432360	C-T	HET	INTERGENIC
SBS	Chr8	11012988	C-T	HET	INTERGENIC
SBS	Chr8	17044124	G-A	HET	INTERGENIC
SBS	Chr8	19056491	T-A	HET	INTERGENIC
SBS	Chr8	19987952	G-T	HET	INTRON
SBS	Chr9	17512984	A-G	HET	INTERGENIC
SBS	Chr9	4372030	A-T	HOMO	INTERGENIC
SBS	Chr9	8397356	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14200

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1026763	1026766	3
Deletion	Chr4	1512165	1512166	1	LOC_Os04g03490
Deletion	Chr12	1939576	1939577	1
Deletion	Chr9	3409287	3409289	2
Deletion	Chr10	3555803	3555804	1
Deletion	Chr11	4273268	4273287	19
Deletion	Chr10	7266247	7266281	34
Deletion	Chr3	9224383	9224397	14
Deletion	Chr9	15090789	15090792	3
Deletion	Chr8	22484954	22484970	16
Deletion	Chr4	27049882	27049883	1
Deletion	Chr5	27408132	27408171	39
Deletion	Chr1	42997097	42997104	7

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10179903	10179904	2
Insertion	Chr1	27444173	27444175	3
Insertion	Chr2	7771116	7771117	2
Insertion	Chr3	24555630	24555669	40
Insertion	Chr4	4182096	4182096	1
Insertion	Chr5	2567681	2567682	2
Insertion	Chr6	7347056	7347056	1
Insertion	Chr7	23017399	23017399	1
Insertion	Chr7	2650368	2650369	2
Insertion	Chr8	15197952	15197963	12	LOC_Os08g25030

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	26826304	26834118
Inversion	Chr3	26826334	26834120

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6981640	Chr3	2404419	LOC_Os12g12664
Translocation	Chr8	13069113	Chr5	5933414
Translocation	Chr5	18363991	Chr3	25422326

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