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Mutant Information |
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Mutant Name | FN2707-S-1 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2707-S-1 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 43
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 25737097 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 28566540 | A-T | HOMO | INTERGENIC | |
SBS | Chr1 | 33236627 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 40685653 | T-A | HOMO | INTERGENIC | |
SBS | Chr2 | 3021181 | A-T | HET | INTERGENIC | |
SBS | Chr2 | 14420186 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 23589382 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 33477237 | T-G | HET | INTRON | |
SBS | Chr3 | 14644109 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g25590 |
SBS | Chr3 | 15916168 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 23303977 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr3 | 33760213 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 34559932 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g60820 |
SBS | Chr4 | 1538725 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 10792584 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 11183593 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 13007908 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 23060186 | C-A | HOMO | INTRON | |
SBS | Chr5 | 8555343 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 20890610 | G-T | HET | INTRON | |
SBS | Chr6 | 8092898 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 8354613 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 11367176 | G-C | HET | INTERGENIC | |
SBS | Chr6 | 13036320 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22430 |
SBS | Chr7 | 8007347 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 8432360 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 14026266 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 14106441 | G-C | HET | INTERGENIC | |
SBS | Chr7 | 14106442 | G-C | HET | INTERGENIC | |
SBS | Chr7 | 18518130 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 29541091 | A-G | HET | INTRON | |
SBS | Chr8 | 11012988 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 17044124 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 19056491 | T-A | HET | INTERGENIC | |
SBS | Chr8 | 19987952 | G-T | HET | INTRON | |
SBS | Chr9 | 4372030 | A-T | HOMO | INTERGENIC | |
SBS | Chr9 | 8397356 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14200 |
SBS | Chr9 | 17512984 | A-G | HET | INTERGENIC | |
SBS | Chr10 | 5486005 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 11363731 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g22010 |
SBS | Chr11 | 5302271 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 15006037 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26200 |
SBS | Chr12 | 8954890 | G-T | HOMO | INTRON |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 1026763 | 1026766 | 3 | |
Deletion | Chr4 | 1512165 | 1512166 | 1 | LOC_Os04g03490 |
Deletion | Chr12 | 1939576 | 1939577 | 1 | |
Deletion | Chr9 | 3409287 | 3409289 | 2 | |
Deletion | Chr10 | 3555803 | 3555804 | 1 | |
Deletion | Chr11 | 4273268 | 4273287 | 19 | |
Deletion | Chr10 | 7266247 | 7266281 | 34 | |
Deletion | Chr3 | 9224383 | 9224397 | 14 | |
Deletion | Chr9 | 15090789 | 15090792 | 3 | |
Deletion | Chr8 | 22484954 | 22484970 | 16 | |
Deletion | Chr4 | 27049882 | 27049883 | 1 | |
Deletion | Chr5 | 27408132 | 27408171 | 39 | |
Deletion | Chr1 | 42997097 | 42997104 | 7 |
Insertions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 2567681 | 2567682 | 2 | |
Insertion | Chr6 | 7347056 | 7347056 | 1 | |
Insertion | Chr7 | 2650368 | 2650369 | 2 | |
Insertion | Chr1 | 10179903 | 10179904 | 2 | |
Insertion | Chr1 | 27444173 | 27444175 | 3 | |
Insertion | Chr2 | 7771116 | 7771117 | 2 | |
Insertion | Chr3 | 24555630 | 24555669 | 40 | |
Insertion | Chr4 | 4182096 | 4182096 | 1 | |
Insertion | Chr7 | 23017399 | 23017399 | 1 | |
Insertion | Chr8 | 15197952 | 15197963 | 12 | LOC_Os08g25030 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 26826304 | 26834118 | |
Inversion | Chr3 | 26826334 | 26834120 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 6981640 | Chr3 | 2404419 | LOC_Os12g12664 |
Translocation | Chr8 | 13069113 | Chr5 | 5933414 | |
Translocation | Chr5 | 18363991 | Chr3 | 25422326 |