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Mutant Information

Mutant Name	FN2714-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2714-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11559019	C-G	HOMO	INTERGENIC
SBS	Chr1	26826808	G-T	HET	INTERGENIC
SBS	Chr1	34522818	C-T	HET	INTERGENIC
SBS	Chr1	42073721	C-T	HET	INTERGENIC
SBS	Chr10	12604490	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr10	21909551	G-A	HET	INTRON
SBS	Chr10	5080053	A-G	HET	INTERGENIC
SBS	Chr11	11815349	C-T	HET	STOP_GAINED	LOC_Os11g20420
SBS	Chr11	12667050	G-A	HET	INTERGENIC
SBS	Chr11	13327173	G-A	HET	INTRON
SBS	Chr11	926269	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02780
SBS	Chr12	16158814	C-G	HET	INTERGENIC
SBS	Chr2	10724682	C-G	HET	INTERGENIC
SBS	Chr2	14329557	G-A	HET	INTERGENIC
SBS	Chr2	20537786	G-A	HET	INTRON
SBS	Chr2	20895932	T-C	HET	INTERGENIC
SBS	Chr2	22419181	G-C	HET	INTERGENIC
SBS	Chr2	33038448	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53960
SBS	Chr3	10937982	G-A	HET	INTERGENIC
SBS	Chr3	15029788	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26280
SBS	Chr3	16317897	C-T	HET	INTERGENIC
SBS	Chr3	28083227	G-C	HET	INTERGENIC
SBS	Chr3	30377951	C-G	HET	INTERGENIC
SBS	Chr3	32260104	C-T	HET	INTERGENIC
SBS	Chr4	14846979	G-A	HET	INTERGENIC
SBS	Chr4	1587853	A-C	HET	INTERGENIC
SBS	Chr4	21923782	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	23219583	T-G	HET	INTERGENIC
SBS	Chr4	24314201	A-G	HET	INTRON
SBS	Chr4	6706688	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g12170
SBS	Chr4	8751430	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16120
SBS	Chr5	10705316	C-T	HET	INTERGENIC
SBS	Chr5	10705320	T-G	HET	INTERGENIC
SBS	Chr5	25687327	C-T	HET	INTERGENIC
SBS	Chr5	8589700	T-C	HET	INTERGENIC
SBS	Chr6	15307702	G-A	HET	INTERGENIC
SBS	Chr6	2560925	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05660
SBS	Chr6	26105902	C-G	HOMO	INTRON
SBS	Chr6	994243	T-C	HOMO	INTERGENIC
SBS	Chr7	26878267	A-C	HET	INTERGENIC
SBS	Chr7	27216921	G-A	HET	INTRON
SBS	Chr7	27216922	G-A	HET	INTRON
SBS	Chr8	15720756	C-T	HET	INTERGENIC
SBS	Chr8	2606293	G-T	HET	INTERGENIC
SBS	Chr8	8303236	C-A	HOMO	INTRON
SBS	Chr9	10852941	A-G	HOMO	UTR_5_PRIME

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	6168442	6168448	6	LOC_Os09g11130
Deletion	Chr12	8260618	8260626	8
Deletion	Chr4	8850262	8850263	1
Deletion	Chr7	9666603	9666604	1
Deletion	Chr5	10096998	10097000	2
Deletion	Chr4	10761252	10761253	1	LOC_Os04g19340
Deletion	Chr9	11035779	11035791	12
Deletion	Chr7	11834401	11834402	1
Deletion	Chr9	13377384	13377385	1
Deletion	Chr6	14476682	14476686	4
Deletion	Chr10	14863025	14863026	1
Deletion	Chr12	15683807	15683808	1
Deletion	Chr8	16945564	16945566	2
Deletion	Chr11	20352001	20385000	32999	7
Deletion	Chr7	21788771	21788785	14
Deletion	Chr3	24090001	24112000	21999	6
Deletion	Chr4	25220379	25220441	62
Deletion	Chr8	27229104	27229124	20
Deletion	Chr5	29855358	29855712	354
Deletion	Chr6	30712942	30712943	1
Deletion	Chr2	32415787	32415791	4

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23210113	23210116	4
Insertion	Chr11	13568674	13568674	1
Insertion	Chr12	24097878	24097879	2
Insertion	Chr3	7706778	7706778	1	LOC_Os03g14205
Insertion	Chr4	4953974	4953974	1
Insertion	Chr6	15971205	15971212	8
Insertion	Chr7	9296576	9296577	2
Insertion	Chr8	7269088	7269088	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr11	19287995	19561891
Inversion	Chr11	19443579	19460301
Inversion	Chr11	19561882	19580201

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2109749	Chr9	9468868	LOC_Os12g04910
Translocation	Chr9	2318979	Chr2	16818229
Translocation	Chr7	2877918	Chr6	26188660
Translocation	Chr5	3543878	Chr3	13563773
Translocation	Chr7	4604537	Chr1	7703254
Translocation	Chr11	5756374	Chr1	31898866	LOC_Os11g10520
Translocation	Chr11	5756424	Chr1	31897578	LOC_Os11g10520
Translocation	Chr11	6603603	Chr3	664990
Translocation	Chr10	6833638	Chr6	18384660
Translocation	Chr9	10373260	Chr2	17573565
Translocation	Chr7	11660419	Chr6	3229970	2
Translocation	Chr11	15465476	Chr1	41568841
Translocation	Chr12	18566350	Chr3	15160099
Translocation	Chr8	20336255	Chr4	2842147
Translocation	Chr6	20343644	Chr4	13171073
Translocation	Chr4	35497981	Chr1	42743842

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