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Mutant Information

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19023763	G-A	HET
SBS	Chr1	25357152	G-C	HET
SBS	Chr1	30599884	A-C	Homo
SBS	Chr1	32023918	T-C	Homo
SBS	Chr1	3892732	G-A	HET
SBS	Chr10	15536990	A-T	HET
SBS	Chr10	16251125	A-G	Homo
SBS	Chr10	6375977	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g11506
SBS	Chr10	7705833	C-T	HET
SBS	Chr11	15298100	T-A	HET
SBS	Chr11	16159965	A-G	Homo
SBS	Chr11	7040988	C-T	HET
SBS	Chr11	8238788	T-G	HET
SBS	Chr12	13222979	G-A	Homo
SBS	Chr12	20402687	G-A	HET
SBS	Chr12	8273338	C-T	Homo
SBS	Chr12	9453348	G-T	Homo
SBS	Chr2	11722189	C-T	Homo
SBS	Chr2	14345780	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24730
SBS	Chr2	20744640	T-C	HET
SBS	Chr2	32028292	G-A	HET
SBS	Chr2	3322960	A-G	HET
SBS	Chr3	11079542	G-A	Homo
SBS	Chr3	18620591	G-A	HET
SBS	Chr3	21289192	C-T	HET
SBS	Chr3	22612598	G-T	HET
SBS	Chr3	25833971	C-A	HET
SBS	Chr3	3594468	C-T	HET
SBS	Chr3	8659151	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15690
SBS	Chr4	12007415	C-T	HET
SBS	Chr4	27461211	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46320
SBS	Chr4	33198857	G-A	HET
SBS	Chr4	6430175	G-T	HET
SBS	Chr4	9988345	G-A	HET
SBS	Chr5	17137151	C-T	Homo
SBS	Chr5	28686428	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g50040
SBS	Chr6	10648889	C-G	Homo
SBS	Chr6	12369945	C-T	Homo
SBS	Chr6	14368981	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24510
SBS	Chr6	25489960	T-C	Homo
SBS	Chr6	28608510	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47180
SBS	Chr7	16263373	G-A	HET
SBS	Chr7	26283880	C-T	HET
SBS	Chr7	938135	G-C	HET
SBS	Chr8	10342902	G-A	HET
SBS	Chr8	1203692	G-A	HET
SBS	Chr9	12250913	G-A	HET
SBS	Chr9	18643267	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g30510
SBS	Chr9	3283698	G-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1944152	1944153	1
Deletion	Chr7	2589886	2589887	1	LOC_Os07g05540
Deletion	Chr7	6375744	6375752	8
Deletion	Chr1	11488869	11489376	507	LOC_Os01g20200
Deletion	Chr4	11843784	11843785	1
Deletion	Chr10	11976634	11976652	18
Deletion	Chr12	12111302	12111307	5	LOC_Os12g21540
Deletion	Chr6	13235222	13235224	2
Deletion	Chr12	14126001	14324000	197999	25
Deletion	Chr1	16527900	16527905	5
Deletion	Chr4	18885922	18885923	1
Deletion	Chr5	20193624	20193627	3	LOC_Os05g34150
Deletion	Chr5	20839914	20839915	1	LOC_Os05g35100
Deletion	Chr9	21932001	22052000	119999	20
Deletion	Chr2	25307897	25307983	86
Deletion	Chr2	28494722	28494724	2
Deletion	Chr5	28885305	28885307	2
Deletion	Chr1	30207103	30207104	1
Deletion	Chr1	41526001	41550000	23999	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	8133344	8133345	2
Insertion	Chr2	9244225	9244232	8

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5674508	6005773
Inversion	Chr7	5674520	6005786
Inversion	Chr12	13768488	14129065	LOC_Os12g24170
Inversion	Chr12	13768506	14323361	LOC_Os12g24170

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4897294	Chr3	25664335
Translocation	Chr9	5339006	Chr1	5500458
Translocation	Chr7	9456293	Chr5	4379871	2
Translocation	Chr7	12281597	Chr1	30943066
Translocation	Chr9	15971916	Chr7	10273987
Translocation	Chr9	15971922	Chr7	10273576
Translocation	Chr4	26656868	Chr3	16448151

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