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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12823354	A-G	HET	INTERGENIC
SBS	Chr1	16716394	T-A	HET	INTERGENIC
SBS	Chr1	24900792	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	42289672	A-G	HET	INTERGENIC
SBS	Chr1	42645991	G-A	HET	INTERGENIC
SBS	Chr10	15026475	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g28820
SBS	Chr10	9183788	A-G	HOMO	INTERGENIC
SBS	Chr11	15025330	G-A	HET	INTERGENIC
SBS	Chr12	14972853	G-A	HET	INTERGENIC
SBS	Chr2	29130293	C-A	HOMO	INTERGENIC
SBS	Chr2	29201436	T-A	HOMO	INTRON
SBS	Chr2	29201437	G-A	HOMO	INTRON
SBS	Chr3	19325189	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	20998327	T-A	HOMO	INTERGENIC
SBS	Chr3	27502209	T-C	HET	SPLICE_SITE_REGION
SBS	Chr3	28285990	G-A	HET	INTERGENIC
SBS	Chr3	29497643	C-A	HET	INTERGENIC
SBS	Chr3	30934365	A-C	HET	INTERGENIC
SBS	Chr4	13545714	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	1369314	A-G	HET	INTERGENIC
SBS	Chr4	22563852	A-G	HET	INTRON
SBS	Chr5	19887232	C-T	HOMO	INTERGENIC
SBS	Chr5	19887233	A-T	HOMO	INTERGENIC
SBS	Chr6	11285826	T-A	HET	INTRON
SBS	Chr6	1290743	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g03380
SBS	Chr6	1872307	C-A	HET	INTERGENIC
SBS	Chr6	1872308	C-T	HET	INTERGENIC
SBS	Chr6	29066343	T-A	HET	INTERGENIC
SBS	Chr7	12567583	T-C	HET	INTRON
SBS	Chr8	18273947	G-A	HOMO	INTERGENIC
SBS	Chr8	20680692	A-T	HOMO	INTERGENIC
SBS	Chr8	2333791	A-G	HET	INTERGENIC
SBS	Chr8	2542960	G-C	HET	INTERGENIC
SBS	Chr8	8120347	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13650
SBS	Chr9	1342413	A-T	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	314092	314094	2
Deletion	Chr10	701702	701703	1
Deletion	Chr3	971001	1118000	146999	21
Deletion	Chr6	1114001	1123000	8999	LOC_Os06g11140
Deletion	Chr1	2607533	2607537	4
Deletion	Chr4	2797684	2797685	1
Deletion	Chr10	4101050	4101052	2
Deletion	Chr9	5768749	5768767	18
Deletion	Chr8	6683197	6683198	1
Deletion	Chr7	7250670	7250691	21
Deletion	Chr4	7293763	7293764	1
Deletion	Chr10	8763658	8763674	16	LOC_Os10g17390
Deletion	Chr2	9198111	9198112	1
Deletion	Chr12	10311523	10311525	2
Deletion	Chr7	15090996	15090997	1
Deletion	Chr5	15279212	15279213	1
Deletion	Chr11	15615272	15615275	3
Deletion	Chr10	15714837	15714839	2	LOC_Os10g30250
Deletion	Chr1	18634078	18634113	35
Deletion	Chr12	19021652	19021665	13
Deletion	Chr7	19989878	19989890	12
Deletion	Chr11	26727910	26727911	1
Deletion	Chr6	29273253	29273254	1
Deletion	Chr4	30464968	30464971	3
Deletion	Chr3	31357705	31357709	4
Deletion	Chr1	33352458	33352461	3

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1307789	1307789	1
Insertion	Chr1	27072046	27072046	1
Insertion	Chr12	15324301	15324332	32
Insertion	Chr12	22275126	22275126	1
Insertion	Chr2	23393977	23393978	2	LOC_Os02g38700
Insertion	Chr3	970242	970242	1
Insertion	Chr4	12174090	12174126	37
Insertion	Chr4	2952709	2952709	1
Insertion	Chr6	16047192	16047260	69
Insertion	Chr6	25226022	25226115	94
Insertion	Chr7	20991174	20991177	4
Insertion	Chr8	13869200	13869200	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	964968	1789128	2
Inversion	Chr3	1118444	1507903

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4765762	Chr1	40659048
Translocation	Chr11	5309499	Chr10	16682476	LOC_Os11g09919
Translocation	Chr11	5309736	Chr10	16682459	LOC_Os11g09919
Translocation	Chr11	7720116	Chr6	4358308

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