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Mutant Information

Mutant Name	FN2726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2726-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17765234	G-A	HET	INTERGENIC
SBS	Chr1	21375444	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	21378812	C-T	HOMO	INTRON
SBS	Chr1	22725927	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g40250
SBS	Chr1	28427909	C-T	HET	INTERGENIC
SBS	Chr1	35236202	G-T	HET	INTERGENIC
SBS	Chr1	36525248	A-G	HET	INTERGENIC
SBS	Chr1	41577467	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	41726711	T-A	HOMO	INTERGENIC
SBS	Chr10	10985501	T-A	HET	INTERGENIC
SBS	Chr10	11420372	A-T	HET	SPLICE_SITE_REGION
SBS	Chr10	12206886	T-C	HET	INTERGENIC
SBS	Chr11	9200123	A-G	HOMO	INTERGENIC
SBS	Chr12	14369242	C-T	HET	INTRON
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC
SBS	Chr2	10634336	C-T	HOMO	INTERGENIC
SBS	Chr2	13024414	C-T	HOMO	INTERGENIC
SBS	Chr2	15903534	C-T	HOMO	INTRON
SBS	Chr2	33300096	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g54300
SBS	Chr2	5379539	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	2501667	A-T	HOMO	INTRON
SBS	Chr3	26440700	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46720
SBS	Chr3	29378168	A-C	HET	INTERGENIC
SBS	Chr3	2953758	A-C	HOMO	INTERGENIC
SBS	Chr3	30118070	T-A	HET	INTERGENIC
SBS	Chr3	31688651	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55650
SBS	Chr3	34826020	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61360
SBS	Chr3	34826022	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61360
SBS	Chr4	13682291	A-T	HET	INTERGENIC
SBS	Chr4	15937864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26940
SBS	Chr4	21827385	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	22751005	A-G	HET	INTRON
SBS	Chr5	15807458	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27170
SBS	Chr5	21840400	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g37340
SBS	Chr6	13480440	A-T	HOMO	INTRON
SBS	Chr6	24316499	T-C	HOMO	INTERGENIC
SBS	Chr7	10682045	A-T	HOMO	INTRON
SBS	Chr7	10700544	A-C	HOMO	INTERGENIC
SBS	Chr7	19545702	T-C	HOMO	UTR_3_PRIME
SBS	Chr8	17821455	A-C	HOMO	INTERGENIC
SBS	Chr8	21730299	A-C	HET	INTERGENIC
SBS	Chr8	3411454	C-T	HET	INTERGENIC
SBS	Chr8	6395685	C-T	HOMO	INTERGENIC
SBS	Chr8	8777938	G-A	HOMO	INTERGENIC
SBS	Chr9	481349	C-T	HOMO	INTRON

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1585050	1585052	2
Deletion	Chr8	2370312	2370314	2
Deletion	Chr4	3918642	3918643	1
Deletion	Chr10	4320795	4320849	54
Deletion	Chr8	6086096	6086100	4	LOC_Os08g10380
Deletion	Chr10	6874019	6874048	29
Deletion	Chr11	7452808	7452809	1
Deletion	Chr1	7900970	7900977	7
Deletion	Chr10	8315449	8315458	9	LOC_Os10g16670
Deletion	Chr12	9114774	9114804	30
Deletion	Chr3	9438348	9438349	1
Deletion	Chr6	9935092	9935110	18
Deletion	Chr12	11256496	11256499	3
Deletion	Chr5	12103903	12103904	1
Deletion	Chr1	12424397	12424405	8
Deletion	Chr11	12489094	12489150	56
Deletion	Chr8	12631918	12631947	29
Deletion	Chr3	12881950	12881952	2
Deletion	Chr10	13818458	13818459	1
Deletion	Chr1	13855483	13855494	11
Deletion	Chr7	14722465	14722477	12
Deletion	Chr6	15526689	15526690	1
Deletion	Chr9	16214876	16214878	2
Deletion	Chr4	16977819	16977823	4
Deletion	Chr11	17115072	17115073	1
Deletion	Chr7	19591289	19591291	2
Deletion	Chr2	20119570	20119577	7
Deletion	Chr2	20527910	20527926	16
Deletion	Chr11	21413840	21413841	1
Deletion	Chr4	22319899	22319901	2
Deletion	Chr2	23723338	23723352	14
Deletion	Chr2	24816985	24817002	17	LOC_Os02g41450
Deletion	Chr3	25350185	25350189	4
Deletion	Chr6	25805318	25805320	2
Deletion	Chr3	25953552	25953587	35
Deletion	Chr3	27267001	27306000	38999	8
Deletion	Chr7	27861523	27861573	50
Deletion	Chr4	27897158	27897159	1
Deletion	Chr11	28977961	28977962	1
Deletion	Chr2	30205081	30205087	6
Deletion	Chr2	33162378	33162380	2
Deletion	Chr3	33638441	33638445	4
Deletion	Chr3	33746163	33746173	10
Deletion	Chr3	34155012	34155024	12	LOC_Os03g60050
Deletion	Chr3	34827426	34827428	2

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	7821753	7821754	2
Insertion	Chr12	17891331	17891352	22
Insertion	Chr12	6289089	6289089	1
Insertion	Chr2	18102857	18102919	63
Insertion	Chr4	2659043	2659044	2
Insertion	Chr6	2392717	2392728	12
Insertion	Chr7	6082727	6082774	48
Insertion	Chr8	13832020	13832056	37
Insertion	Chr9	18532249	18532260	12
Insertion	Chr9	19653117	19653118	2
Insertion	Chr9	7418697	7418698	2

No Inversion

No Translocation

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