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Mutant Information

Mutant Name	FN2727-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2727-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19023763	G-A	HET	INTRON
SBS	Chr1	25357152	G-C	HET	INTRON
SBS	Chr1	30599884	A-C	HOMO	INTERGENIC
SBS	Chr1	32023918	T-C	HOMO	INTERGENIC
SBS	Chr10	16251125	A-G	HOMO	INTERGENIC
SBS	Chr10	6375977	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g11506
SBS	Chr11	16159965	A-G	HOMO	INTRON
SBS	Chr11	7040988	C-T	HET	INTERGENIC
SBS	Chr11	8238788	T-G	HET	INTERGENIC
SBS	Chr12	13222979	G-A	HOMO	INTERGENIC
SBS	Chr12	20402687	G-A	HET	INTERGENIC
SBS	Chr12	25540643	C-G	HET	SYNONYMOUS_CODING
SBS	Chr12	8273338	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	9453348	G-T	HOMO	INTERGENIC
SBS	Chr2	11722189	C-T	HOMO	INTRON
SBS	Chr2	20282309	T-A	HOMO	INTERGENIC
SBS	Chr2	20744640	T-C	HET	INTERGENIC
SBS	Chr2	32028292	G-A	HET	INTERGENIC
SBS	Chr3	11079542	G-A	HOMO	INTRON
SBS	Chr3	21289192	C-T	HET	INTERGENIC
SBS	Chr3	22612598	G-T	HET	INTERGENIC
SBS	Chr3	25833971	C-A	HET	INTERGENIC
SBS	Chr3	3594468	C-T	HOMO	INTERGENIC
SBS	Chr4	12007415	C-T	HET	INTERGENIC
SBS	Chr4	27461211	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46320
SBS	Chr4	33183104	C-T	HET	INTERGENIC
SBS	Chr4	6430175	G-T	HET	INTERGENIC
SBS	Chr4	8475390	C-T	HET	UTR_5_PRIME
SBS	Chr4	8475391	C-T	HET	UTR_5_PRIME
SBS	Chr4	9988345	G-A	HET	INTERGENIC
SBS	Chr5	17137151	C-T	HOMO	INTERGENIC
SBS	Chr5	28686428	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50040
SBS	Chr5	3178719	C-A	HET	INTERGENIC
SBS	Chr6	10648889	C-G	HOMO	INTERGENIC
SBS	Chr6	12369945	C-T	HOMO	INTERGENIC
SBS	Chr6	25489960	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr7	16263373	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	26283880	C-T	HET	INTERGENIC
SBS	Chr8	1203692	G-A	HET	INTERGENIC
SBS	Chr9	12250913	G-A	HET	INTERGENIC
SBS	Chr9	18643267	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g30510

Deletions: 53

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1551259	1551269	10
Deletion	Chr2	1839938	1839954	16
Deletion	Chr3	1944152	1944153	1
Deletion	Chr6	2196881	2196886	5	LOC_Os06g04980
Deletion	Chr7	2589886	2589887	1	LOC_Os07g05540
Deletion	Chr10	2632319	2632320	1
Deletion	Chr1	4440327	4440330	3
Deletion	Chr7	6375744	6375752	8
Deletion	Chr11	7125232	7125238	6
Deletion	Chr2	7974871	7974884	13
Deletion	Chr3	8284084	8284087	3	LOC_Os03g15160
Deletion	Chr11	8839144	8839146	2
Deletion	Chr4	8895924	8895937	13	LOC_Os04g16370
Deletion	Chr8	9056951	9056952	1	LOC_Os08g15010
Deletion	Chr6	10307306	10307327	21
Deletion	Chr1	10767793	10767815	22
Deletion	Chr8	11049599	11049641	42
Deletion	Chr3	11088934	11088939	5
Deletion	Chr10	11749540	11749583	43
Deletion	Chr10	11976634	11976640	6
Deletion	Chr12	12111302	12111307	5	LOC_Os12g21540
Deletion	Chr6	13235222	13235224	2
Deletion	Chr12	14129001	14324000	194999	25
Deletion	Chr11	15102504	15102523	19
Deletion	Chr8	16315574	16315576	2
Deletion	Chr1	16527900	16527905	5
Deletion	Chr5	16886308	16886311	3	LOC_Os05g28800
Deletion	Chr2	16947734	16947823	89
Deletion	Chr3	18264749	18264750	1
Deletion	Chr8	18606559	18606563	4
Deletion	Chr4	18885922	18885923	1
Deletion	Chr1	18944532	18944550	18	LOC_Os01g34350
Deletion	Chr12	19143415	19143427	12
Deletion	Chr4	19733021	19733022	1	LOC_Os04g32730
Deletion	Chr8	19927377	19927378	1
Deletion	Chr8	20082892	20082893	1
Deletion	Chr5	20193624	20193627	3	LOC_Os05g34150
Deletion	Chr8	20439912	20439926	14
Deletion	Chr12	21247509	21247511	2
Deletion	Chr6	21739120	21739124	4
Deletion	Chr5	21821137	21821138	1
Deletion	Chr9	21943001	22044000	100999	17
Deletion	Chr4	25015896	25015905	9
Deletion	Chr5	25083865	25083895	30
Deletion	Chr7	25231484	25231485	1
Deletion	Chr3	25393870	25393875	5
Deletion	Chr8	26470863	26470864	1
Deletion	Chr11	27641105	27641106	1
Deletion	Chr2	28494722	28494724	2
Deletion	Chr1	30207103	30207104	1
Deletion	Chr1	39402521	39402533	12
Deletion	Chr1	40029264	40029269	5
Deletion	Chr1	41523001	41550000	26999	7

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	13226315	13226324	10
Insertion	Chr3	8487997	8487998	2
Insertion	Chr4	3880735	3880735	1
Insertion	Chr7	12158378	12158378	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr7	5674508	6005773
Inversion	Chr7	5674520	6005786
Inversion	Chr12	13768488	14129065
Inversion	Chr12	13768506	14323361
Inversion	Chr3	26158513	26158741

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	5339006	Chr1	5500458
Translocation	Chr9	15971916	Chr7	10273987
Translocation	Chr9	15971922	Chr7	10273576

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