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Mutant Information

Mutant Name	FN2735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2735-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 60

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27387925	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g47840
SBS	Chr1	27387925	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g47840
SBS	Chr1	616894	C-T	HET
SBS	Chr1	8272420	T-G	HET
SBS	Chr1	8272420	T-G	HET	UTR_3_PRIME
SBS	Chr1	9168536	G-A	Homo
SBS	Chr1	9168536	G-A	HOMO	INTRON
SBS	Chr10	1280514	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g03070
SBS	Chr10	4415597	C-T	HET
SBS	Chr10	6931317	A-T	HET
SBS	Chr10	6931317	A-T	HET	INTERGENIC
SBS	Chr11	5592997	C-T	Homo
SBS	Chr11	5592997	C-T	HOMO	UTR_3_PRIME
SBS	Chr12	17047000	C-G	HET
SBS	Chr12	17047000	C-G	HET	INTRON
SBS	Chr12	9201439	G-T	HET
SBS	Chr2	32872840	G-A	HET
SBS	Chr2	32872840	G-A	HET	INTERGENIC
SBS	Chr2	35082389	C-T	HET
SBS	Chr2	35082389	C-T	HET	INTRON
SBS	Chr2	4780196	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09280
SBS	Chr3	11934805	G-C	Homo
SBS	Chr3	11934805	G-C	HOMO	INTERGENIC
SBS	Chr3	21049440	G-A	HET
SBS	Chr3	21049440	G-A	HET	INTERGENIC
SBS	Chr3	21049441	C-A	HET
SBS	Chr3	21049441	C-A	HET	INTERGENIC
SBS	Chr3	22719043	C-A	HET
SBS	Chr3	22719043	C-A	HET	INTERGENIC
SBS	Chr3	22719044	T-A	HET
SBS	Chr3	22719044	T-A	HET	INTERGENIC
SBS	Chr3	28326449	T-C	HET	INTERGENIC
SBS	Chr3	5625085	T-C	Homo
SBS	Chr3	5625085	T-C	HOMO	INTERGENIC
SBS	Chr3	8739209	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	11967	C-T	HET
SBS	Chr4	19611566	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32580
SBS	Chr4	28193306	C-A	Homo
SBS	Chr4	28193306	C-A	HOMO	INTRON
SBS	Chr5	19407161	G-T	HET
SBS	Chr5	19407161	G-T	HET	INTERGENIC
SBS	Chr6	11976900	T-C	HET
SBS	Chr6	11976900	T-C	HET	INTERGENIC
SBS	Chr6	11976901	A-T	HET
SBS	Chr6	11976901	A-T	HET	INTERGENIC
SBS	Chr6	11976902	C-T	HET
SBS	Chr6	11976902	C-T	HET	INTERGENIC
SBS	Chr6	12769637	C-T	HET	INTERGENIC
SBS	Chr6	16715294	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29260
SBS	Chr6	31190382	T-G	Homo
SBS	Chr6	31190382	T-G	HOMO	INTERGENIC
SBS	Chr6	8735655	G-T	Homo
SBS	Chr6	8735655	G-T	HOMO	INTERGENIC
SBS	Chr6	9699199	C-A	HET
SBS	Chr8	12265008	G-C	HET
SBS	Chr8	12265008	G-C	HET	INTERGENIC
SBS	Chr8	26986863	A-C	HET
SBS	Chr8	26986863	A-C	HET	INTERGENIC
SBS	Chr8	7779656	C-T	HET
SBS	Chr9	16501564	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27135

Deletions: 51

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	133457	133458	1
Deletion	Chr10	518604	518605	1
Deletion	Chr1	992250	992295	45
Deletion	Chr8	1911419	1911421	2
Deletion	Chr4	1937797	1937798	1
Deletion	Chr5	2405200	2405201	1
Deletion	Chr1	2906206	2906207	1
Deletion	Chr6	3287783	3287789	6	2
Deletion	Chr2	3819903	3819904	1
Deletion	Chr8	4252392	4252457	65
Deletion	Chr9	4759101	4759106	5
Deletion	Chr4	5306107	5306116	9
Deletion	Chr10	5857326	5857327	1
Deletion	Chr8	7283058	7283059	1
Deletion	Chr10	8728114	8728115	1
Deletion	Chr12	8895880	8895882	2
Deletion	Chr5	9565373	9565374	1
Deletion	Chr5	9908248	9908249	1
Deletion	Chr8	10456913	10456941	28
Deletion	Chr1	10884004	10884006	2
Deletion	Chr9	11015974	11015980	6	2
Deletion	Chr7	11447635	11447636	1
Deletion	Chr12	12035144	12035309	165
Deletion	Chr7	12166680	12166681	1
Deletion	Chr7	12169778	12169779	1
Deletion	Chr3	12206509	12206510	1
Deletion	Chr3	12206713	12206714	1
Deletion	Chr8	12584371	12584372	1
Deletion	Chr4	12686839	12686840	1
Deletion	Chr2	13051627	13051629	2
Deletion	Chr6	14040088	14040089	1
Deletion	Chr4	14619868	14619885	17
Deletion	Chr8	15304149	15304150	1	LOC_Os08g25190
Deletion	Chr10	15534467	15534489	22
Deletion	Chr7	17305022	17305023	1
Deletion	Chr11	17738876	17738877	1
Deletion	Chr6	19641970	19641971	1
Deletion	Chr2	20070677	20070683	6
Deletion	Chr5	22014692	22014693	1
Deletion	Chr10	22621280	22621282	2
Deletion	Chr1	23494088	23494093	5
Deletion	Chr3	26061955	26061956	1	LOC_Os03g46080
Deletion	Chr8	26672356	26672357	1
Deletion	Chr8	26736967	26736973	6
Deletion	Chr11	26895145	26895146	1
Deletion	Chr2	28384425	28384446	21
Deletion	Chr4	29551232	29551348	116
Deletion	Chr3	34199001	34262000	62999	10
Deletion	Chr3	34201001	34261000	59999	10
Deletion	Chr1	36921033	36921034	1
Deletion	Chr1	37206411	37206429	18

Insertions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11281091	11281091	1
Insertion	Chr1	16220855	16220855	1
Insertion	Chr1	19621410	19621410	1
Insertion	Chr1	23401001	23401006	6
Insertion	Chr1	26678442	26678442	1
Insertion	Chr1	33860431	33860431	1
Insertion	Chr1	5763183	5763188	6
Insertion	Chr10	18877063	18877074	12
Insertion	Chr10	20977113	20977113	1
Insertion	Chr12	18817390	18817390	1
Insertion	Chr2	21223671	21223671	1
Insertion	Chr2	23353062	23353062	1
Insertion	Chr2	5699213	5699218	6
Insertion	Chr2	9139264	9139264	1	LOC_Os02g16060
Insertion	Chr4	26597673	26597673	1
Insertion	Chr4	28033918	28033918	1
Insertion	Chr5	13212615	13212615	1
Insertion	Chr5	17503644	17503649	6
Insertion	Chr5	29750609	29750616	8
Insertion	Chr6	11110065	11110065	1
Insertion	Chr6	19967524	19967526	3
Insertion	Chr7	26050686	26050686	1
Insertion	Chr8	10714504	10714505	2
Insertion	Chr8	17547260	17547260	1
Insertion	Chr8	24481451	24481453	3
Insertion	Chr8	4932614	4932614	1	LOC_Os08g08550
Insertion	Chr8	5192175	5192177	3	2
Insertion	Chr8	5192175	5192181	7	2
Insertion	Chr9	10011417	10011417	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	959677	963747

Translocations: 35

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	728649	Chr2	13225552	2
Translocation	Chr7	1503924	Chr4	3249683
Translocation	Chr8	2694146	Chr1	16146323
Translocation	Chr7	3694378	Chr4	3213554
Translocation	Chr7	5440325	Chr6	7372684
Translocation	Chr10	6538384	Chr4	9746190
Translocation	Chr9	7218440	Chr2	4247059
Translocation	Chr9	7228101	Chr6	7358335
Translocation	Chr8	7820676	Chr1	8343013
Translocation	Chr12	11058664	Chr8	15320629
Translocation	Chr12	11861800	Chr11	1474966
Translocation	Chr12	12547956	Chr10	18187587	LOC_Os12g22260
Translocation	Chr6	14459837	Chr4	8661879
Translocation	Chr11	16827494	Chr10	2906715	LOC_Os10g05770
Translocation	Chr8	18074316	Chr1	18737722	LOC_Os01g34040
Translocation	Chr11	18177016	Chr8	17758093
Translocation	Chr2	18249663	Chr1	15324159
Translocation	Chr5	18271745	Chr4	28907054
Translocation	Chr7	18715623	Chr1	2892092	LOC_Os07g31530
Translocation	Chr4	19146715	Chr3	17621955
Translocation	Chr6	19268947	Chr1	15459835
Translocation	Chr8	19690453	Chr6	13904217
Translocation	Chr12	20096544	Chr6	23395012
Translocation	Chr8	20135621	Chr1	2999829
Translocation	Chr10	20165813	Chr4	31852132
Translocation	Chr6	20520242	Chr1	878755
Translocation	Chr12	21494618	Chr11	17511549
Translocation	Chr12	22003598	Chr2	33566140
Translocation	Chr9	22299529	Chr2	21647280
Translocation	Chr11	22502094	Chr10	3012238	LOC_Os11g37950
Translocation	Chr6	23802805	Chr3	4986014
Translocation	Chr12	26916650	Chr2	17337443
Translocation	Chr12	27085284	Chr11	18154422
Translocation	Chr3	30999477	Chr1	19980757	2
Translocation	Chr3	35300731	Chr2	16481527	2

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