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Mutant Information

Mutant Name	FN2752-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2752-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 86

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11085472	G-A	HET	INTERGENIC
SBS	Chr1	38329087	T-A	HET	INTERGENIC
SBS	Chr1	5734781	T-C	HET
SBS	Chr10	13322043	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g25720
SBS	Chr10	14198418	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26960
SBS	Chr10	16923342	G-A	Homo
SBS	Chr10	16936883	C-A	HET
SBS	Chr10	19310054	C-T	Homo
SBS	Chr10	268031	T-A	HET	INTERGENIC
SBS	Chr10	8924128	T-C	HET
SBS	Chr11	13595362	C-T	HET	INTERGENIC
SBS	Chr11	13595363	C-T	HET	INTERGENIC
SBS	Chr11	14463859	T-C	HET	INTERGENIC
SBS	Chr11	16839493	G-A	Homo
SBS	Chr11	19312246	C-G	HET
SBS	Chr11	20621523	A-G	HET	INTERGENIC
SBS	Chr11	21862430	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37040
SBS	Chr11	4450055	G-A	HET	INTRON
SBS	Chr11	8964784	C-A	HET	INTERGENIC
SBS	Chr12	11613192	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19930
SBS	Chr12	12126480	T-A	HET
SBS	Chr12	20325124	A-T	HET
SBS	Chr12	2507640	A-G	HET
SBS	Chr12	25807949	G-C	HET	UTR_3_PRIME
SBS	Chr12	2684496	C-T	HET
SBS	Chr12	3358586	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06900
SBS	Chr12	9791407	G-A	HET
SBS	Chr2	14556979	G-C	HET
SBS	Chr2	20017290	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	22254500	C-G	HET
SBS	Chr2	35011523	A-G	HOMO	UTR_3_PRIME
SBS	Chr3	15157907	G-C	Homo
SBS	Chr3	21198057	T-A	HET
SBS	Chr3	22836943	G-A	HET
SBS	Chr3	23123639	G-A	Homo
SBS	Chr3	24991745	A-G	HET	INTERGENIC
SBS	Chr3	26074698	A-C	HOMO	INTRON
SBS	Chr3	2779069	A-C	Homo
SBS	Chr3	35816617	A-C	HET
SBS	Chr3	4658856	A-C	Homo
SBS	Chr3	7067518	T-C	HET
SBS	Chr3	7533718	C-A	HET
SBS	Chr3	758046	T-A	Homo
SBS	Chr3	9693514	C-T	HOMO	INTERGENIC
SBS	Chr4	10549755	C-T	Homo
SBS	Chr4	10571919	G-A	HET
SBS	Chr4	11850838	C-T	HET
SBS	Chr4	13282736	A-G	HET	INTERGENIC
SBS	Chr4	14328301	A-G	HET
SBS	Chr4	14555339	C-T	Homo
SBS	Chr4	34110384	G-T	Homo
SBS	Chr4	3439632	G-A	HET	INTERGENIC
SBS	Chr4	4394064	A-G	Homo
SBS	Chr4	8402055	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14940
SBS	Chr4	9411765	G-A	Homo
SBS	Chr5	19981449	A-G	HET
SBS	Chr5	2183428	C-T	HET
SBS	Chr5	24686172	T-A	HET
SBS	Chr5	24878722	C-A	HET
SBS	Chr5	25335409	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g43570
SBS	Chr5	524062	G-C	HET	INTERGENIC
SBS	Chr6	16543925	C-T	HET	INTERGENIC
SBS	Chr6	16586458	G-A	HET
SBS	Chr6	1854729	T-C	HET	INTERGENIC
SBS	Chr6	20182219	C-A	HET	INTERGENIC
SBS	Chr6	22165436	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	22281600	G-A	HET
SBS	Chr6	31238421	C-T	Homo
SBS	Chr7	11741318	C-T	HET
SBS	Chr7	11741319	C-T	HET
SBS	Chr7	17845212	T-C	HET
SBS	Chr7	21742057	G-A	HET	INTRON
SBS	Chr7	23972237	T-A	Homo
SBS	Chr7	485240	G-A	HET	INTERGENIC
SBS	Chr8	12324413	C-T	Homo
SBS	Chr8	14123077	A-C	HET
SBS	Chr8	21195051	G-A	HOMO	INTRON
SBS	Chr8	21195053	G-A	HOMO	INTRON
SBS	Chr8	21257219	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g33950
SBS	Chr8	25452213	C-T	HET
SBS	Chr8	4288197	G-A	Homo
SBS	Chr8	4419035	T-C	HET	INTERGENIC
SBS	Chr8	4419036	G-A	HET	INTERGENIC
SBS	Chr9	13755872	T-G	HET
SBS	Chr9	21254558	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36860
SBS	Chr9	21254559	G-A	HET	SYNONYMOUS_CODING

Deletions: 44

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	229034	229038	4
Deletion	Chr2	813864	813865	1
Deletion	Chr6	1732923	1732924	1
Deletion	Chr11	2416414	2416419	5
Deletion	Chr6	3089458	3089472	14
Deletion	Chr7	3713278	3713279	1
Deletion	Chr12	4055986	4055992	6
Deletion	Chr4	4616765	4616766	1
Deletion	Chr11	5596160	5596161	1
Deletion	Chr7	6082689	6082781	92
Deletion	Chr8	6760515	6760516	1
Deletion	Chr4	7116361	7116363	2
Deletion	Chr2	7509736	7509761	25	LOC_Os02g13850
Deletion	Chr7	9612033	9612049	16
Deletion	Chr7	10071021	10071030	9	LOC_Os07g17140
Deletion	Chr4	10543478	10543479	1	LOC_Os04g18980
Deletion	Chr6	10869131	10869139	8	LOC_Os06g19100
Deletion	Chr12	11557621	11557638	17
Deletion	Chr4	11939996	11939998	2
Deletion	Chr4	12169992	12170048	56
Deletion	Chr9	12626465	12626467	2
Deletion	Chr7	12938685	12938687	2	LOC_Os07g22960
Deletion	Chr6	13228457	13228483	26	LOC_Os06g22740
Deletion	Chr2	14327914	14327915	1
Deletion	Chr9	14670798	14670799	1
Deletion	Chr4	14967133	14967137	4
Deletion	Chr12	15540968	15540969	1
Deletion	Chr4	16073910	16073956	46
Deletion	Chr1	16534207	16534208	1
Deletion	Chr1	17941212	17941222	10
Deletion	Chr1	18915877	18915879	2
Deletion	Chr12	19188001	19234000	45999	6
Deletion	Chr12	19238001	19287000	48999	5
Deletion	Chr2	19685614	19685617	3
Deletion	Chr6	22178018	22178020	2
Deletion	Chr7	22686675	22686743	68
Deletion	Chr4	22740769	22740770	1
Deletion	Chr2	22902795	22902796	1
Deletion	Chr1	26192332	26192333	1
Deletion	Chr4	30479024	30479027	3
Deletion	Chr1	31498875	31498878	3
Deletion	Chr1	33853177	33853178	1
Deletion	Chr2	34463476	34463483	7	LOC_Os02g56300
Deletion	Chr3	35708142	35708146	4

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21772474	21772476	3
Insertion	Chr10	749754	749754	1	LOC_Os10g02180
Insertion	Chr11	26072450	26072459	10	2
Insertion	Chr11	26072450	26072451	2	2
Insertion	Chr12	21997879	21997880	2
Insertion	Chr2	22009569	22009584	16
Insertion	Chr3	13380250	13380250	1
Insertion	Chr3	14831618	14831623	6
Insertion	Chr3	14987577	14987577	1
Insertion	Chr4	7546470	7546470	1	LOC_Os04g13530
Insertion	Chr5	29103569	29103570	2
Insertion	Chr8	8918680	8918685	6
Insertion	Chr9	13663140	13663159	20
Insertion	Chr9	18970946	18970961	16

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2223307	2223408
Inversion	Chr5	3190947	3969039
Inversion	Chr5	3190954	3969053
Inversion	Chr3	18032367	18073228	LOC_Os03g31650
Inversion	Chr8	21855186	22366710	LOC_Os08g34760
Inversion	Chr8	21855200	22366711	LOC_Os08g34760
Inversion	Chr8	24138434	24138581
Inversion	Chr1	25962861	26492157
Inversion	Chr1	25962864	26492159

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2785627	Chr3	16685673
Translocation	Chr9	4040357	Chr6	8105987
Translocation	Chr11	4272848	Chr9	3387619	LOC_Os09g06990
Translocation	Chr3	4835539	Chr2	31043205
Translocation	Chr4	5588399	Chr1	25576624
Translocation	Chr3	11066394	Chr2	29255718
Translocation	Chr12	11794917	Chr1	14847551	LOC_Os12g20220
Translocation	Chr11	12942262	Chr4	779243	2
Translocation	Chr3	13539829	Chr2	30014446	LOC_Os03g23860
Translocation	Chr9	16882224	Chr2	34742587	2
Translocation	Chr10	17232345	Chr1	7861565
Translocation	Chr5	17883172	Chr3	31648212
Translocation	Chr2	27133113	Chr1	25821321

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