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| Mutant Information |
|---|
| Mutant Name | FN2753-S-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2753-S-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 53
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19869737 | C-T | HET | SPLICE_SITE_REGION | |
| SBS | Chr1 | 32411948 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g56270 |
| SBS | Chr1 | 37383247 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 5218310 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 6468134 | T-A | HET | INTRON | |
| SBS | Chr11 | 14702422 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 3124308 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 10806750 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 13719698 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24110 |
| SBS | Chr12 | 20945927 | T-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 9883563 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 13981702 | G-C | HET | INTRON | |
| SBS | Chr2 | 21978201 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 22166422 | C-T | HET | INTRON | |
| SBS | Chr2 | 28020379 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr2 | 28619547 | C-G | HET | INTERGENIC | |
| SBS | Chr2 | 34059622 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 11016643 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 19807278 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 30058467 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 31281611 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 34375481 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 10419810 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 13261573 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 14794999 | T-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 18883696 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 18883697 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 19214358 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 21204477 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 9449393 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 9713475 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 12140692 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g20710 |
| SBS | Chr5 | 13463307 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 13966379 | A-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 15848560 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 17575533 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g30310 |
| SBS | Chr5 | 26333603 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 6736152 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 13295840 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 29084919 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 29479680 | T-C | HET | INTRON | |
| SBS | Chr6 | 29666964 | G-A | HET | INTRON | |
| SBS | Chr6 | 3336626 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 14862611 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 17135547 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 11350651 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 13660220 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 2920476 | A-T | HET | INTRON | |
| SBS | Chr8 | 3384582 | A-G | HET | INTRON | |
| SBS | Chr8 | 7049914 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 16227092 | A-G | HET | INTRON | |
| SBS | Chr9 | 19412409 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 9012709 | G-A | HET | INTERGENIC |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1126869 | 1126870 | 1 | |
| Deletion | Chr12 | 1524590 | 1524596 | 6 | LOC_Os12g03750 |
| Deletion | Chr8 | 3556776 | 3556777 | 1 | |
| Deletion | Chr2 | 6900186 | 6900187 | 1 | |
| Deletion | Chr6 | 7240174 | 7240179 | 5 | |
| Deletion | Chr11 | 7844946 | 7844950 | 4 | |
| Deletion | Chr12 | 8797140 | 8797142 | 2 | |
| Deletion | Chr3 | 8978766 | 8978775 | 9 | |
| Deletion | Chr6 | 11485476 | 11485487 | 11 | |
| Deletion | Chr8 | 13690957 | 13690958 | 1 | LOC_Os08g22780 |
| Deletion | Chr5 | 13803903 | 13803918 | 15 | |
| Deletion | Chr5 | 15461704 | 15461724 | 20 | |
| Deletion | Chr3 | 19627439 | 19627458 | 19 | |
| Deletion | Chr6 | 19660768 | 19660770 | 2 | |
| Deletion | Chr12 | 20910937 | 20910938 | 1 | |
| Deletion | Chr4 | 22303876 | 22303878 | 2 | |
| Deletion | Chr9 | 22456585 | 22456597 | 12 | |
| Deletion | Chr12 | 23568278 | 23568285 | 7 | |
| Deletion | Chr12 | 27205500 | 27205505 | 5 | |
| Deletion | Chr3 | 31822800 | 31822801 | 1 | |
| Deletion | Chr1 | 39835952 | 39835955 | 3 | |
| Deletion | Chr1 | 42653212 | 42653218 | 6 |
Insertions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 42924480 | 42924491 | 12 | |
| Insertion | Chr10 | 19335143 | 19335150 | 8 | |
| Insertion | Chr10 | 3803882 | 3803887 | 6 | |
| Insertion | Chr2 | 23897680 | 23897691 | 12 | |
| Insertion | Chr2 | 9833388 | 9833441 | 54 | |
| Insertion | Chr3 | 11687382 | 11687415 | 34 | |
| Insertion | Chr3 | 34742196 | 34742197 | 2 | |
| Insertion | Chr3 | 34850513 | 34850535 | 23 | |
| Insertion | Chr4 | 18351090 | 18351121 | 32 | |
| Insertion | Chr4 | 5284154 | 5284154 | 1 | LOC_Os04g09840 |
| Insertion | Chr7 | 24240108 | 24240186 | 79 | |
| Insertion | Chr8 | 5393714 | 5393744 | 31 | |
| Insertion | Chr8 | 6483063 | 6483063 | 1 |
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5440859 | Chr9 | 10360803 | |
| Translocation | Chr9 | 7263466 | Chr6 | 24467961 | |
| Translocation | Chr8 | 7726574 | Chr1 | 31258109 | |
| Translocation | Chr8 | 12890399 | Chr5 | 26582797 | |
| Translocation | Chr8 | 12890406 | Chr1 | 20080061 | |
| Translocation | Chr6 | 21336980 | Chr4 | 20208694 |