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Mutant Information

Mutant Name	FN2755-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2755-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 68

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9434029	T-C	HET
SBS	Chr1	37507648	G-C	HET
SBS	Chr1	37507649	C-A	HET
SBS	Chr2	2634256	G-A	Homo
SBS	Chr2	15002416	C-T	HET
SBS	Chr2	20841243	A-C	Homo
SBS	Chr2	31025719	T-C	HET
SBS	Chr2	33538703	T-C	HET
SBS	Chr2	34470348	C-T	HET
SBS	Chr3	3746463	G-A	HET
SBS	Chr3	13559330	C-T	Homo
SBS	Chr3	16954453	C-T	HET
SBS	Chr3	21377557	C-T	HET
SBS	Chr3	23504046	C-T	Homo
SBS	Chr4	2596474	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g05200
SBS	Chr4	33051752	C-T	HET
SBS	Chr4	34835738	C-T	HET
SBS	Chr4	35149459	C-A	HET
SBS	Chr5	7640675	A-T	Homo
SBS	Chr6	2740088	C-T	HET
SBS	Chr6	20681932	T-C	HET
SBS	Chr6	21705788	C-T	HET
SBS	Chr6	25372163	A-T	HET
SBS	Chr7	2042434	G-T	Homo
SBS	Chr7	2524882	G-C	Homo
SBS	Chr7	5110292	A-G	HET
SBS	Chr7	6910651	T-C	HET
SBS	Chr7	20923497	C-T	Homo
SBS	Chr8	10312430	A-G	HET
SBS	Chr8	17769894	A-G	HET
SBS	Chr8	25156066	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g39730
SBS	Chr10	4405639	G-A	HET
SBS	Chr12	13267692	C-T	HET
SBS	Chr12	14987782	G-A	HET
SBS	Chr12	22100654	G-A	HET
SBS	Chr12	24232295	T-A	HET
SBS	Chr1	21816863	A-G	HOMO	INTRON
SBS	Chr1	37817119	T-C	HOMO	INTERGENIC
SBS	Chr1	43089237	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g74390
SBS	Chr1	43240515	C-A	HET	INTERGENIC
SBS	Chr2	4687717	A-T	HET	INTRON
SBS	Chr2	13432238	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22510
SBS	Chr2	17801513	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29950
SBS	Chr2	35342528	T-C	HET	INTRON
SBS	Chr3	7809773	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14349
SBS	Chr3	12421208	C-T	HET	INTERGENIC
SBS	Chr3	22544820	T-C	HET	INTERGENIC
SBS	Chr3	28987007	T-A	HET	INTERGENIC
SBS	Chr3	29419488	C-A	HOMO	INTERGENIC
SBS	Chr4	1733217	A-G	HET	INTERGENIC
SBS	Chr4	20648675	G-T	HET	INTERGENIC
SBS	Chr5	11174840	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19240
SBS	Chr5	16446053	C-T	HET	INTRON
SBS	Chr5	20131613	G-A	HET	INTERGENIC
SBS	Chr6	8983079	C-T	HET	INTERGENIC
SBS	Chr6	22043188	A-G	HOMO	INTERGENIC
SBS	Chr7	251638	T-A	HET	INTERGENIC
SBS	Chr7	8252066	T-C	HET	INTERGENIC
SBS	Chr7	18289125	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30890
SBS	Chr7	20419501	T-C	HET	INTERGENIC
SBS	Chr10	19019792	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35560
SBS	Chr10	19022677	C-G	HET	INTRON
SBS	Chr11	3427229	C-T	HET	UTR_3_PRIME
SBS	Chr11	4226652	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08080
SBS	Chr11	10280648	G-A	HOMO	INTRON
SBS	Chr11	21218407	T-A	HET	INTERGENIC
SBS	Chr12	8312897	G-T	HET	INTERGENIC
SBS	Chr12	9847784	C-T	HET	INTERGENIC

Deletions: 64

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	180941	180967	26
Deletion	Chr7	1040851	1040856	5
Deletion	Chr10	1220827	1220828	1	LOC_Os10g02960
Deletion	Chr8	1288043	1288059	16	LOC_Os08g02960
Deletion	Chr8	1362522	1362523	1
Deletion	Chr8	1421213	1421215	2
Deletion	Chr5	1572994	1572995	1
Deletion	Chr1	4072974	4072980	6
Deletion	Chr2	4406562	4406563	1
Deletion	Chr2	4883156	4883157	1
Deletion	Chr11	5168027	5168032	5
Deletion	Chr10	5305299	5305300	1	LOC_Os10g09810
Deletion	Chr7	6156198	6156199	1	LOC_Os07g11160
Deletion	Chr7	6227649	6227652	3
Deletion	Chr12	8068786	8068788	2
Deletion	Chr11	8233027	8233075	48	LOC_Os11g14610
Deletion	Chr8	8545561	8545562	1
Deletion	Chr5	8545926	8545927	1
Deletion	Chr10	8728114	8728115	1
Deletion	Chr1	9514665	9514667	2
Deletion	Chr12	9600340	9600341	1	LOC_Os12g16750
Deletion	Chr8	9807985	9807986	1	LOC_Os08g16080
Deletion	Chr5	9893210	9893211	1
Deletion	Chr7	9914851	9914852	1
Deletion	Chr1	10767259	10767269	10
Deletion	Chr8	10893001	10908000	14999	2
Deletion	Chr4	11041854	11041856	2
Deletion	Chr12	11725122	11725136	14
Deletion	Chr6	11934001	11951000	16999	3
Deletion	Chr1	12680300	12680306	6
Deletion	Chr9	13052001	13081000	28999	3
Deletion	Chr9	13771289	13771316	27
Deletion	Chr8	14221350	14221351	1
Deletion	Chr11	14925126	14925127	1
Deletion	Chr11	15070869	15070888	19
Deletion	Chr6	16082829	16082830	1	LOC_Os06g28310
Deletion	Chr12	16674017	16674018	1
Deletion	Chr6	16785006	16785011	5
Deletion	Chr8	17445053	17445054	1
Deletion	Chr12	17479698	17479748	50	LOC_Os12g29430
Deletion	Chr6	17783796	17783797	1
Deletion	Chr5	18350712	18350713	1
Deletion	Chr11	18406151	18406152	1
Deletion	Chr3	18975401	18975402	1
Deletion	Chr3	19229638	19229642	4
Deletion	Chr4	19764151	19764152	1
Deletion	Chr1	20162089	20162104	15
Deletion	Chr5	20510461	20510462	1
Deletion	Chr5	21422062	21422064	2
Deletion	Chr10	21456586	21456591	5	LOC_Os10g40060
Deletion	Chr11	22189730	22189731	1	LOC_Os11g37590
Deletion	Chr2	22470466	22470474	8
Deletion	Chr1	22482043	22482051	8
Deletion	Chr12	22891456	22891457	1
Deletion	Chr3	25248173	25248174	1
Deletion	Chr11	25389394	25389396	2
Deletion	Chr5	25393618	25393627	9	LOC_Os05g43680
Deletion	Chr6	26250904	26250908	4
Deletion	Chr1	29569677	29569687	10
Deletion	Chr1	30443824	30443825	1	LOC_Os01g52950
Deletion	Chr2	30911870	30911871	1
Deletion	Chr1	31167182	31167188	6
Deletion	Chr1	34942764	34942767	3
Deletion	Chr1	36629159	36629160	1

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	8657225	8657226	2
Insertion	Chr3	31582364	31582365	2
Insertion	Chr5	11128475	11128475	1
Insertion	Chr5	17611700	17611700	1	LOC_Os05g30380
Insertion	Chr10	5264583	5264583	1
Insertion	Chr12	6994745	6994745	1
Insertion	Chr1	4849324	4849327	4
Insertion	Chr4	6055173	6055176	4
Insertion	Chr9	18946833	18946833	1
Insertion	Chr12	22833330	22833331	2
Insertion	Chr1	7292911	7292911	1
Insertion	Chr2	32768240	32768240	1
Insertion	Chr3	22475639	22475639	1
Insertion	Chr4	10479946	10479946	1
Insertion	Chr5	6652240	6652240	1
Insertion	Chr5	8994961	8994961	1
Insertion	Chr6	22684837	22684837	1
Insertion	Chr6	29983219	29983219	1
Insertion	Chr7	16836657	16836657	1	LOC_Os07g28760
Insertion	Chr7	27351637	27351637	1
Insertion	Chr8	15899208	15899208	1
Insertion	Chr9	214333	214333	1	LOC_Os09g01250
Insertion	Chr9	11135138	11135138	1
Insertion	Chr12	4997260	4997273	14
Insertion	Chr12	25686369	25686369	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9780788	9838284
Inversion	Chr4	10802700	10820855	LOC_Os04g19420
Inversion	Chr4	10802702	10820860	LOC_Os04g19420
Inversion	Chr11	18825586	18828949
Inversion	Chr6	24684474	24686396	LOC_Os06g41250

Translocations: 30

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	987248	Chr2	30921565
Translocation	Chr2	2071734	Chr1	1499653
Translocation	Chr11	3129576	Chr6	18189937
Translocation	Chr8	4126990	Chr1	3219749
Translocation	Chr5	7147889	Chr3	10130140
Translocation	Chr12	7165584	Chr1	30931778
Translocation	Chr8	8178750	Chr3	28268378
Translocation	Chr7	10123760	Chr4	10495508
Translocation	Chr12	10782173	Chr3	13483603
Translocation	Chr6	11735568	Chr5	18456079
Translocation	Chr6	11736057	Chr5	18456109
Translocation	Chr12	12183087	Chr2	9649794
Translocation	Chr4	15031765	Chr2	10522098
Translocation	Chr11	15249059	Chr1	11769608
Translocation	Chr8	16449095	Chr6	24693727
Translocation	Chr10	18451785	Chr6	8105161	LOC_Os10g34614
Translocation	Chr11	18508356	Chr1	40950870
Translocation	Chr8	18628532	Chr4	2531450
Translocation	Chr11	19361833	Chr2	7462906
Translocation	Chr11	19361845	Chr2	7462449
Translocation	Chr8	19749963	Chr2	5753914
Translocation	Chr11	19762910	Chr8	17299594	2
Translocation	Chr9	21485649	Chr3	5772142	LOC_Os03g11210
Translocation	Chr9	21486962	Chr3	5772135	LOC_Os03g11210
Translocation	Chr9	21486980	Chr1	40120894	LOC_Os01g69040
Translocation	Chr9	21487539	Chr1	40120848	LOC_Os01g69040
Translocation	Chr11	24445386	Chr4	29686988	2
Translocation	Chr11	24994391	Chr4	17873076
Translocation	Chr6	25586141	Chr2	15328433
Translocation	Chr11	25898149	Chr9	4534242

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