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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2705820	T-A	HET	INTERGENIC
SBS	Chr1	2705821	T-A	HET	INTERGENIC
SBS	Chr1	10338098	T-A	HET	INTERGENIC
SBS	Chr1	25988202	G-A	HET	INTERGENIC
SBS	Chr1	30674377	A-G	HET	INTERGENIC
SBS	Chr1	31780580	T-A	HET	INTERGENIC
SBS	Chr1	31829407	A-T	HET	INTRON
SBS	Chr1	31829408	C-T	HET	INTRON
SBS	Chr1	32593026	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	40187573	T-A	HET	INTRON
SBS	Chr2	4273579	G-A	HET	INTRON
SBS	Chr2	12022759	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	31657048	C-A	HET	INTERGENIC
SBS	Chr2	33050915	G-T	HET	INTERGENIC
SBS	Chr2	33660546	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g54950
SBS	Chr2	34571220	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56470
SBS	Chr3	31761794	C-T	HET	INTRON
SBS	Chr3	32589559	G-A	HET	INTERGENIC
SBS	Chr4	1304862	C-G	HOMO	INTERGENIC
SBS	Chr4	14605535	C-T	HET	INTRON
SBS	Chr6	5417713	A-G	HET	INTERGENIC
SBS	Chr7	1051848	T-C	HET	INTERGENIC
SBS	Chr7	3142393	G-T	HOMO	INTERGENIC
SBS	Chr8	626114	T-C	HET	INTERGENIC
SBS	Chr8	2121835	C-T	HOMO	INTERGENIC
SBS	Chr8	24911772	G-A	HOMO	INTERGENIC
SBS	Chr10	2837559	C-A	HET	INTERGENIC
SBS	Chr10	6949626	A-G	HET	INTRON
SBS	Chr11	2561379	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g05640
SBS	Chr11	6072187	T-C	HET	INTRON
SBS	Chr11	11837190	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	12613191	G-T	HOMO	INTERGENIC
SBS	Chr12	13234893	T-A	HOMO	INTERGENIC
SBS	Chr12	19324468	G-A	HOMO	INTERGENIC
SBS	Chr12	23863604	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38840

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2597452	2597455	3
Deletion	Chr7	4811246	4811249	3
Deletion	Chr6	6042371	6042373	2
Deletion	Chr2	6145001	6242000	96999	18
Deletion	Chr9	6695802	6695803	1	LOC_Os09g11910
Deletion	Chr6	7381576	7381586	10
Deletion	Chr6	7944395	7944397	2
Deletion	Chr1	9814606	9814612	6
Deletion	Chr5	11241548	11241555	7
Deletion	Chr4	12033478	12033486	8
Deletion	Chr7	12378404	12378407	3	LOC_Os07g22160
Deletion	Chr11	12703147	12703160	13
Deletion	Chr7	12784123	12784150	27
Deletion	Chr11	12928032	12928033	1
Deletion	Chr7	14334994	14335004	10
Deletion	Chr9	14580019	14580028	9
Deletion	Chr9	15329755	15329761	6	LOC_Os09g25550
Deletion	Chr1	15888473	15888475	2
Deletion	Chr12	16820291	16820294	3
Deletion	Chr1	20513128	20513132	4
Deletion	Chr11	23681828	23681833	5
Deletion	Chr3	26574067	26574072	5
Deletion	Chr7	28925081	28925091	10
Deletion	Chr3	29795429	29795433	4	LOC_Os03g51950

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	309583	309584	2
Insertion	Chr3	3420522	3420522	1
Insertion	Chr3	29575658	29575658	1
Insertion	Chr4	1172272	1172273	2
Insertion	Chr10	21374201	21374202	2
Insertion	Chr12	26458989	26458991	3
Insertion	Chr1	7232157	7232184	28
Insertion	Chr1	11453811	11453908	98
Insertion	Chr3	24042829	24042857	29	LOC_Os03g43090
Insertion	Chr4	18351092	18351093	2
Insertion	Chr4	22634356	22634361	6
Insertion	Chr6	24395000	24395003	4
Insertion	Chr7	2810242	2810250	9	LOC_Os07g05850
Insertion	Chr7	9506528	9506529	2
Insertion	Chr7	26518228	26518239	12
Insertion	Chr8	9743026	9743026	1
Insertion	Chr10	2543900	2543932	33	LOC_Os10g05190
Insertion	Chr10	20920804	20920817	14
Insertion	Chr11	19238521	19238530	10

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	7672677	Chr11	12902997
Translocation	Chr12	7673491	Chr11	12902991
Translocation	Chr12	18589407	Chr1	25366245

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