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Mutant Information

Mutant Name	FN2760-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2760-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24079900	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42380
SBS	Chr1	33415770	A-T	HET	INTERGENIC
SBS	Chr1	38963367	A-G	HOMO	INTRON
SBS	Chr1	42614682	G-T	HOMO	INTERGENIC
SBS	Chr2	22809468	G-A	HET	INTERGENIC
SBS	Chr2	24119268	G-A	HET	INTERGENIC
SBS	Chr3	5081935	A-T	HET	INTERGENIC
SBS	Chr3	15273771	C-T	HET	INTERGENIC
SBS	Chr3	24351741	T-A	HET	UTR_3_PRIME
SBS	Chr4	1879352	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	23624265	G-T	HOMO	INTERGENIC
SBS	Chr4	27189684	G-A	HET	INTERGENIC
SBS	Chr5	7672215	T-G	HET	INTERGENIC
SBS	Chr5	13167871	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g23090
SBS	Chr5	19329526	G-A	HET	INTRON
SBS	Chr5	20922188	G-A	HET	INTERGENIC
SBS	Chr6	1931718	A-C	HET	INTRON
SBS	Chr6	11656598	G-T	HET	INTERGENIC
SBS	Chr6	23279874	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39210
SBS	Chr7	7232423	G-C	HET	INTERGENIC
SBS	Chr7	22021365	T-C	HOMO	INTERGENIC
SBS	Chr8	1145855	G-A	HOMO	INTERGENIC
SBS	Chr8	8346774	C-G	HET	INTERGENIC
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr8	9709994	C-T	HET	INTERGENIC
SBS	Chr8	10726780	C-A	HET	INTERGENIC
SBS	Chr8	13592008	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	14996931	A-G	HET	INTERGENIC
SBS	Chr9	927556	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr9	1849659	T-C	HET	INTERGENIC
SBS	Chr9	5815002	A-G	HOMO	INTERGENIC
SBS	Chr9	15096594	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25200
SBS	Chr9	16064093	A-C	HET	INTERGENIC
SBS	Chr9	16277900	C-T	HET	INTERGENIC
SBS	Chr10	4984701	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	14811180	G-A	HET	INTRON
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr11	18750348	G-T	HOMO	INTERGENIC
SBS	Chr11	18835617	C-T	HOMO	INTERGENIC
SBS	Chr11	19514303	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g33010
SBS	Chr12	4947647	G-C	HET	INTERGENIC
SBS	Chr12	7476720	G-T	HET	INTRON
SBS	Chr12	8754309	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15340
SBS	Chr12	11156387	T-G	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	154442	154445	3
Deletion	Chr1	1041395	1041411	16
Deletion	Chr8	1146210	1146219	9
Deletion	Chr9	3769920	3769922	2
Deletion	Chr3	3926633	3926642	9
Deletion	Chr1	4754142	4754150	8
Deletion	Chr2	8324181	8324262	81	LOC_Os02g14910
Deletion	Chr3	8333818	8333819	1
Deletion	Chr11	10493781	10493782	1
Deletion	Chr6	10986253	10986255	2
Deletion	Chr4	11697497	11697498	1
Deletion	Chr11	12183558	12183723	165
Deletion	Chr12	13377146	13377231	85
Deletion	Chr10	14374939	14374998	59
Deletion	Chr12	15196896	15196912	16
Deletion	Chr6	16907000	16907011	11
Deletion	Chr1	16944540	16945180	640
Deletion	Chr12	17193510	17193513	3
Deletion	Chr5	18706226	18706251	25
Deletion	Chr11	20261136	20261138	2
Deletion	Chr1	22489499	22489505	6
Deletion	Chr6	23897737	23897743	6
Deletion	Chr8	25737633	25737636	3
Deletion	Chr8	27640229	27640241	12
Deletion	Chr4	32458876	32458877	1
Deletion	Chr1	36614284	36614288	4

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	1636478	1636479	2
Insertion	Chr5	5637477	5637480	4
Insertion	Chr10	10023519	10023520	2
Insertion	Chr1	13350428	13350448	21
Insertion	Chr1	37224120	37224120	1	LOC_Os01g64080
Insertion	Chr2	26741205	26741205	1
Insertion	Chr2	27006153	27006153	1
Insertion	Chr2	31575783	31575825	43
Insertion	Chr5	2688519	2688520	2
Insertion	Chr5	9884707	9884707	1
Insertion	Chr5	23363511	23363602	92
Insertion	Chr6	29567318	29567318	1
Insertion	Chr7	9697229	9697247	19
Insertion	Chr8	7730860	7730863	4
Insertion	Chr8	17584919	17584970	52
Insertion	Chr9	85582	85583	2
Insertion	Chr10	6770999	6770999	1
Insertion	Chr11	3974782	3974783	2
Insertion	Chr11	12166884	12166960	77
Insertion	Chr11	17738803	17738850	48
Insertion	Chr11	21228138	21228138	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5162135	5369004
Inversion	Chr12	5162140	5369003

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5167642	Chr5	11350817	2
Translocation	Chr5	6369909	Chr4	16080755
Translocation	Chr10	6421368	Chr4	4049220
Translocation	Chr7	8883502	Chr4	13157426
Translocation	Chr7	8886936	Chr4	13157416
Translocation	Chr7	16449369	Chr1	34373767
Translocation	Chr4	20478531	Chr3	26496410
Translocation	Chr4	23352079	Chr3	12730507
Translocation	Chr11	26258692	Chr4	6930152

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