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| Mutant Information |
|---|
| Mutant Name | FN2792-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2792-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1822144 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04140 |
| SBS | Chr1 | 2036054 | C-T | HET | ||
| SBS | Chr1 | 29606179 | G-A | HET | ||
| SBS | Chr1 | 34993044 | T-C | HET | ||
| SBS | Chr1 | 39958105 | A-G | HET | ||
| SBS | Chr10 | 16314018 | A-G | Homo | ||
| SBS | Chr10 | 5419574 | G-A | Homo | ||
| SBS | Chr10 | 7995739 | A-C | Homo | ||
| SBS | Chr11 | 10451920 | T-C | HET | ||
| SBS | Chr11 | 13307981 | G-A | HET | ||
| SBS | Chr11 | 17572506 | A-G | HET | ||
| SBS | Chr11 | 27410360 | A-G | HET | ||
| SBS | Chr11 | 2973399 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g06220 |
| SBS | Chr11 | 5623009 | A-G | HET | ||
| SBS | Chr11 | 9774269 | T-C | HET | ||
| SBS | Chr12 | 19389575 | T-A | Homo | ||
| SBS | Chr12 | 22052525 | C-G | HET | ||
| SBS | Chr12 | 8096573 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14240 |
| SBS | Chr12 | 8698672 | G-A | HET | ||
| SBS | Chr2 | 12718861 | G-A | HET | ||
| SBS | Chr2 | 15310379 | G-C | HET | ||
| SBS | Chr2 | 15310389 | G-A | HET | ||
| SBS | Chr2 | 15906306 | G-T | HET | ||
| SBS | Chr2 | 15906307 | A-T | HET | ||
| SBS | Chr2 | 26946745 | A-C | HET | ||
| SBS | Chr2 | 700928 | C-A | Homo | ||
| SBS | Chr3 | 23781548 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g42710 |
| SBS | Chr4 | 12797121 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22600 |
| SBS | Chr5 | 10992251 | C-T | Homo | ||
| SBS | Chr5 | 17908519 | C-A | HET | ||
| SBS | Chr7 | 26531689 | C-T | HET | ||
| SBS | Chr7 | 27638279 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g46340 |
| SBS | Chr8 | 3154714 | T-A | Homo | ||
| SBS | Chr9 | 11321370 | C-A | HET | ||
| SBS | Chr9 | 641127 | G-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 45004 | 45009 | 5 | LOC_Os03g01060 |
| Deletion | Chr6 | 1053898 | 1053915 | 17 | |
| Deletion | Chr8 | 4174723 | 4174724 | 1 | |
| Deletion | Chr7 | 4275102 | 4275132 | 30 | |
| Deletion | Chr8 | 9217588 | 9217599 | 11 | LOC_Os08g15220 |
| Deletion | Chr2 | 10098818 | 10098829 | 11 | |
| Deletion | Chr8 | 11178088 | 11179083 | 995 | LOC_Os08g18730 |
| Deletion | Chr7 | 11402161 | 11402162 | 1 | |
| Deletion | Chr7 | 14058242 | 14058251 | 9 | LOC_Os07g24710 |
| Deletion | Chr6 | 16940315 | 16940317 | 2 | |
| Deletion | Chr9 | 20896625 | 20896628 | 3 | LOC_Os09g36230 |
| Deletion | Chr12 | 21103264 | 21103282 | 18 | |
| Deletion | Chr12 | 21292922 | 21292926 | 4 | |
| Deletion | Chr6 | 28214001 | 28225000 | 10999 | |
| Deletion | Chr4 | 35081797 | 35081801 | 4 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 26648567 | 26648568 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 9915047 | 10808525 | LOC_Os07g16860 |
No Translocation