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Mutant Information

Mutant Name	FN282-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN282-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10125726	A-T	HOMO	INTERGENIC
SBS	Chr1	10826360	A-G	HET	SPLICE_SITE_REGION
SBS	Chr1	39182346	C-A	HET	INTERGENIC
SBS	Chr1	43140227	A-G	HOMO	INTERGENIC
SBS	Chr2	15191885	T-C	HET	INTERGENIC
SBS	Chr2	18608200	A-T	HET	INTRON
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	23212518	T-A	HET	INTRON
SBS	Chr3	10113212	C-T	HOMO	INTERGENIC
SBS	Chr3	20862800	G-A	HOMO	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7279312	G-A	HOMO	INTRON
SBS	Chr5	20545263	C-A	HET	INTRON
SBS	Chr5	24157547	C-T	HOMO	INTRON
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr6	29862591	C-T	HET	INTERGENIC
SBS	Chr6	31223968	C-T	HOMO	INTRON
SBS	Chr7	13241783	G-A	HET	INTERGENIC
SBS	Chr7	23287185	A-T	HET	INTERGENIC
SBS	Chr8	18833211	A-T	HOMO	INTERGENIC
SBS	Chr9	4091276	C-T	HET	INTRON
SBS	Chr10	11108174	T-A	HET	INTERGENIC
SBS	Chr12	1841927	A-T	HET	INTERGENIC
SBS	Chr12	6774019	C-T	HOMO	INTERGENIC
SBS	Chr12	15436367	A-G	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	29993	29996	3
Deletion	Chr2	2595844	2595848	4	LOC_Os02g05400
Deletion	Chr6	6386236	6386237	1
Deletion	Chr12	7263943	7263947	4
Deletion	Chr6	8622454	8622459	5
Deletion	Chr10	11854872	11854878	6	LOC_Os10g22810
Deletion	Chr1	12649001	12951000	302000	46
Deletion	Chr1	12996001	13149000	153000	27
Deletion	Chr1	13547561	13547562	1
Deletion	Chr12	16973489	16973505	16
Deletion	Chr1	18379399	18379406	7	LOC_Os01g33380
Deletion	Chr10	19209924	19209928	4
Deletion	Chr10	20867255	20867265	10
Deletion	Chr9	22408537	22408553	16
Deletion	Chr2	25604822	25604823	1
Deletion	Chr7	28392723	28392724	1
Deletion	Chr3	28929824	28929836	12
Deletion	Chr6	31212312	31212318	6
Deletion	Chr2	33885038	33885055	17

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8165447	8197980
Inversion	Chr2	9000863	18585672
Inversion	Chr8	12093614	12832108	2
Inversion	Chr12	15463386	16213937
Inversion	Chr3	34173778	34205714	LOC_Os03g60150

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	12102564	Chr3	12152322	LOC_Os03g21270
Translocation	Chr8	12832181	Chr3	12152945	2
Translocation	Chr3	34176672	Chr2	22691729	2
Translocation	Chr3	34207018	Chr2	22691706	LOC_Os02g37590

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