Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HOMO	INTRON
SBS	Chr1	13065733	A-C	HET	INTERGENIC
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr1	38177427	C-T	HOMO	INTERGENIC
SBS	Chr10	14997881	C-A	HOMO	INTRON
SBS	Chr10	17277369	G-A	HOMO	INTRON
SBS	Chr10	277168	C-T	HOMO	INTERGENIC
SBS	Chr10	4848461	C-T	HET	INTERGENIC
SBS	Chr10	6193388	C-T	HOMO	INTERGENIC
SBS	Chr11	24763953	A-G	HOMO	INTERGENIC
SBS	Chr12	26029242	G-A	HET	INTERGENIC
SBS	Chr12	7868106	T-A	HET	INTRON
SBS	Chr12	8825627	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15460
SBS	Chr2	26839347	C-T	HOMO	INTERGENIC
SBS	Chr2	32053141	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52370
SBS	Chr2	33294935	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	29251478	G-T	HET	INTERGENIC
SBS	Chr4	1416736	T-C	HET	INTERGENIC
SBS	Chr4	1427557	G-A	HET	INTERGENIC
SBS	Chr4	1866242	C-T	HET	INTERGENIC
SBS	Chr4	1866244	T-G	HET	INTERGENIC
SBS	Chr4	1866246	G-A	HET	INTERGENIC
SBS	Chr4	31562917	T-A	HET	UTR_5_PRIME
SBS	Chr5	15305393	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	23097425	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g39374
SBS	Chr5	4597905	A-G	HET	INTERGENIC
SBS	Chr6	28304037	G-A	HET	INTERGENIC
SBS	Chr6	7797539	G-C	HOMO	INTERGENIC
SBS	Chr7	16490789	C-A	HOMO	INTERGENIC
SBS	Chr8	25903981	G-A	HOMO	INTERGENIC
SBS	Chr9	13355074	G-T	HET	SPLICE_SITE_REGION
SBS	Chr9	21555091	C-A	HOMO	INTRON
SBS	Chr9	9457489	C-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	81524	81525	1
Deletion	Chr4	553645	553651	6
Deletion	Chr4	855444	855445	1
Deletion	Chr11	1907677	1907678	1
Deletion	Chr9	8270488	8270495	7
Deletion	Chr2	8607828	8607831	3	LOC_Os02g15390
Deletion	Chr1	9125405	9125406	1
Deletion	Chr12	12618997	12618998	1
Deletion	Chr3	13662865	13662873	8
Deletion	Chr5	14348534	14348535	1
Deletion	Chr3	15430271	15430278	7
Deletion	Chr1	16405866	16405869	3
Deletion	Chr1	18240313	18240336	23
Deletion	Chr5	18411801	18411813	12
Deletion	Chr9	18492244	18492245	1	LOC_Os09g30380
Deletion	Chr2	18889713	18889714	1
Deletion	Chr12	18897996	18898021	25
Deletion	Chr12	21616413	21616420	7	LOC_Os12g35550
Deletion	Chr2	27179001	27362000	182999	23
Deletion	Chr6	28880838	28880839	1
Deletion	Chr4	31347973	31347975	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10777281	10777387	107
Insertion	Chr5	8832919	8832920	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr6	27753523	27993012
Inversion	Chr6	27753524	27993012
Inversion	Chr3	27865085	27867267
Inversion	Chr3	27865094	27876894

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6602449	Chr8	2455477	LOC_Os11g11890
Translocation	Chr10	8618910	Chr2	27336528	LOC_Os02g45070
Translocation	Chr10	8940054	Chr2	33380386	2
Translocation	Chr10	8940902	Chr2	33380384	LOC_Os02g54500
Translocation	Chr11	17194294	Chr8	16610026
Translocation	Chr4	23950107	Chr1	293091	LOC_Os01g01580

Main menu