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Mutant Information |
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Mutant Name | FN2882-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2882-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 33
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 12513187 | G-A | HOMO | INTRON | |
SBS | Chr1 | 13065733 | A-C | HET | INTERGENIC | |
SBS | Chr1 | 21428496 | C-G | HOMO | INTRON | |
SBS | Chr1 | 38177427 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 26839347 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 32053141 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g52370 |
SBS | Chr2 | 33294935 | G-A | HOMO | UTR_5_PRIME | |
SBS | Chr3 | 29251478 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 1416736 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 1427557 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 1866242 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 1866244 | T-G | HET | INTERGENIC | |
SBS | Chr4 | 1866246 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 31562917 | T-A | HET | UTR_5_PRIME | |
SBS | Chr5 | 4597905 | A-G | HET | INTERGENIC | |
SBS | Chr5 | 15305393 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr5 | 23097425 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g39374 |
SBS | Chr6 | 7797539 | G-C | HOMO | INTERGENIC | |
SBS | Chr6 | 28304037 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 16490789 | C-A | HOMO | INTERGENIC | |
SBS | Chr8 | 25903981 | G-A | HOMO | INTERGENIC | |
SBS | Chr9 | 9457489 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 13355074 | G-T | HET | SPLICE_SITE_REGION | |
SBS | Chr9 | 21555091 | C-A | HOMO | INTRON | |
SBS | Chr10 | 277168 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 4848461 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 6193388 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 14997881 | C-A | HOMO | INTRON | |
SBS | Chr10 | 17277369 | G-A | HOMO | INTRON | |
SBS | Chr11 | 24763953 | A-G | HOMO | INTERGENIC | |
SBS | Chr12 | 7868106 | T-A | HET | INTRON | |
SBS | Chr12 | 8825627 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g15460 |
SBS | Chr12 | 26029242 | G-A | HET | INTERGENIC |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 81524 | 81525 | 1 | |
Deletion | Chr4 | 553645 | 553651 | 6 | |
Deletion | Chr4 | 855444 | 855445 | 1 | |
Deletion | Chr11 | 1907677 | 1907678 | 1 | |
Deletion | Chr9 | 8270488 | 8270495 | 7 | |
Deletion | Chr2 | 8607828 | 8607831 | 3 | LOC_Os02g15390 |
Deletion | Chr1 | 9125405 | 9125406 | 1 | |
Deletion | Chr12 | 12618997 | 12618998 | 1 | |
Deletion | Chr3 | 13662865 | 13662873 | 8 | |
Deletion | Chr5 | 14348534 | 14348535 | 1 | |
Deletion | Chr3 | 15430271 | 15430278 | 7 | |
Deletion | Chr1 | 16405866 | 16405869 | 3 | |
Deletion | Chr1 | 18240313 | 18240336 | 23 | |
Deletion | Chr5 | 18411801 | 18411813 | 12 | |
Deletion | Chr9 | 18492244 | 18492245 | 1 | LOC_Os09g30380 |
Deletion | Chr2 | 18889713 | 18889714 | 1 | |
Deletion | Chr12 | 18897996 | 18898021 | 25 | |
Deletion | Chr12 | 21616413 | 21616420 | 7 | LOC_Os12g35550 |
Deletion | Chr2 | 27179001 | 27362000 | 182999 | 23 |
Deletion | Chr6 | 28880838 | 28880839 | 1 | |
Deletion | Chr4 | 31347973 | 31347975 | 2 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 10777281 | 10777387 | 107 | |
Insertion | Chr5 | 8832919 | 8832920 | 2 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 27753523 | 27993012 | |
Inversion | Chr6 | 27753524 | 27993012 | |
Inversion | Chr3 | 27865085 | 27867267 | |
Inversion | Chr3 | 27865094 | 27876894 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr11 | 6602449 | Chr8 | 2455477 | LOC_Os11g11890 |
Translocation | Chr10 | 8618910 | Chr2 | 27336528 | LOC_Os02g45070 |
Translocation | Chr10 | 8940054 | Chr2 | 33380386 | 2 |
Translocation | Chr10 | 8940902 | Chr2 | 33380384 | LOC_Os02g54500 |
Translocation | Chr11 | 17194294 | Chr8 | 16610026 | |
Translocation | Chr4 | 23950107 | Chr1 | 293091 | LOC_Os01g01580 |