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Mutant Information

Mutant Name	FN2883-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2883-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14458287	G-A	HET	INTERGENIC
SBS	Chr1	22065252	A-G	HOMO	INTERGENIC
SBS	Chr1	38351088	C-T	HOMO	INTERGENIC
SBS	Chr10	15088133	G-A	HET	INTERGENIC
SBS	Chr10	16416194	T-C	HET	INTERGENIC
SBS	Chr10	3668606	A-C	HET	INTERGENIC
SBS	Chr10	3668608	A-C	HET	INTERGENIC
SBS	Chr10	6401309	C-T	HET	INTERGENIC
SBS	Chr11	11746812	T-C	HET	INTRON
SBS	Chr11	12935029	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22500
SBS	Chr11	14100823	T-C	HET	INTERGENIC
SBS	Chr11	20783228	T-A	HOMO	INTERGENIC
SBS	Chr11	4456690	A-C	HOMO	INTERGENIC
SBS	Chr12	11500530	A-G	HOMO	INTRON
SBS	Chr12	13435261	C-T	HOMO	INTRON
SBS	Chr12	9793253	G-A	HOMO	INTRON
SBS	Chr12	9864751	C-T	HOMO	INTERGENIC
SBS	Chr2	12124272	C-G	HET	INTERGENIC
SBS	Chr2	20054662	C-T	HET	INTERGENIC
SBS	Chr2	25727567	A-T	HOMO	INTRON
SBS	Chr2	26987485	C-T	HET	INTERGENIC
SBS	Chr2	2723665	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05600
SBS	Chr2	30176294	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g49390
SBS	Chr2	8240152	C-A	HET	INTERGENIC
SBS	Chr2	9331009	G-A	HET	INTERGENIC
SBS	Chr3	34121030	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g59980
SBS	Chr3	4711406	T-C	HOMO	INTERGENIC
SBS	Chr4	1206266	C-G	HET	INTERGENIC
SBS	Chr4	13378724	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	13888214	G-A	HOMO	INTERGENIC
SBS	Chr4	17394803	C-T	HET	INTERGENIC
SBS	Chr4	27441010	G-T	HOMO	INTERGENIC
SBS	Chr5	1965199	A-G	HOMO	INTERGENIC
SBS	Chr5	20672718	C-A	HOMO	INTERGENIC
SBS	Chr5	20860796	C-T	HOMO	INTERGENIC
SBS	Chr5	9425717	C-T	HET	INTERGENIC
SBS	Chr6	20491399	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g35160
SBS	Chr6	30285103	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g50010
SBS	Chr6	30285104	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g50010
SBS	Chr6	94616	A-T	HET	INTERGENIC
SBS	Chr8	26062588	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g41270
SBS	Chr8	27801040	A-C	HET	INTRON
SBS	Chr8	8359394	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr9	5313975	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09800

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1504979	1504980	1
Deletion	Chr9	2623773	2623828	55
Deletion	Chr10	3457814	3457817	3
Deletion	Chr11	5533540	5533549	9	LOC_Os11g10200
Deletion	Chr10	6377357	6377365	8
Deletion	Chr7	7250670	7250691	21
Deletion	Chr1	7806665	7806681	16
Deletion	Chr7	7852045	7852048	3
Deletion	Chr10	10187577	10187578	1	LOC_Os10g20260
Deletion	Chr6	11961524	11961525	1
Deletion	Chr6	12916374	12916386	12
Deletion	Chr8	16441084	16441161	77
Deletion	Chr2	17171550	17171559	9
Deletion	Chr11	17184178	17184180	2
Deletion	Chr10	19299744	19299745	1	LOC_Os10g36090
Deletion	Chr9	19366599	19366602	3	LOC_Os09g32440
Deletion	Chr9	21123409	21123431	22
Deletion	Chr2	24224134	24224135	1
Deletion	Chr1	27462752	27462753	1
Deletion	Chr3	31917782	31917783	1
Deletion	Chr3	32505819	32505823	4
Deletion	Chr1	40965392	40965393	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	17244519	17244519	1
Insertion	Chr4	45138	45230	93
Insertion	Chr5	1949289	1949289	1
Insertion	Chr6	3357094	3357094	1
Insertion	Chr7	20462942	20462943	2
Insertion	Chr8	23996433	23996478	46
Insertion	Chr8	24064919	24064919	1
Insertion	Chr8	794187	794188	2
Insertion	Chr9	12763238	12763243	6
Insertion	Chr9	874090	874148	59

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18648861	18899542

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2233762	Chr5	28810789
Translocation	Chr8	9335286	Chr2	19023541	LOC_Os02g32200
Translocation	Chr10	18648841	Chr1	31373321
Translocation	Chr10	18899533	Chr1	31374973
Translocation	Chr11	22562642	Chr10	9197237
Translocation	Chr11	22562649	Chr10	9196660

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