Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13018313	C-T	HET	INTERGENIC
SBS	Chr1	16580755	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29590
SBS	Chr1	6988151	A-C	HET	INTRON
SBS	Chr10	14414328	A-G	HET	INTERGENIC
SBS	Chr11	15739419	G-A	HOMO	INTERGENIC
SBS	Chr11	21563933	C-T	HOMO	INTERGENIC
SBS	Chr11	22235822	G-A	HOMO	INTERGENIC
SBS	Chr11	4819498	G-A	HET	INTRON
SBS	Chr11	5165496	G-A	HET	UTR_3_PRIME
SBS	Chr11	5705102	G-A	HET	INTERGENIC
SBS	Chr12	21615320	G-A	HET	INTRON
SBS	Chr12	9728440	C-A	HET	INTERGENIC
SBS	Chr2	20090426	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	23539187	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38950
SBS	Chr2	2422831	G-T	HOMO	INTERGENIC
SBS	Chr2	5979100	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11640
SBS	Chr2	5979103	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	12550076	T-A	HOMO	INTRON
SBS	Chr3	1464969	G-A	HET	INTRON
SBS	Chr3	31435133	G-C	HET	INTERGENIC
SBS	Chr3	5180826	A-C	HET	UTR_3_PRIME
SBS	Chr4	1218218	T-G	HET	INTRON
SBS	Chr4	29736574	G-T	HET	INTERGENIC
SBS	Chr5	21572118	T-C	HOMO	INTERGENIC
SBS	Chr5	7555367	T-G	HOMO	INTERGENIC
SBS	Chr5	8233504	G-T	HET	INTERGENIC
SBS	Chr6	14329984	G-A	HET	INTERGENIC
SBS	Chr6	19314314	C-T	HET	INTERGENIC
SBS	Chr6	6994945	C-T	HET	INTERGENIC
SBS	Chr7	10420379	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17640
SBS	Chr7	11878498	A-G	HET	INTERGENIC
SBS	Chr7	456654	G-A	HOMO	INTRON
SBS	Chr7	4996468	T-A	HOMO	INTRON
SBS	Chr8	21880396	G-A	HET	INTERGENIC
SBS	Chr8	24435829	C-A	HOMO	INTERGENIC
SBS	Chr8	24602772	C-T	HOMO	INTRON
SBS	Chr8	25606796	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	1413980	A-G	HET	INTERGENIC
SBS	Chr9	20213487	A-T	HET	INTERGENIC
SBS	Chr9	20728514	G-A	HET	INTERGENIC

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	112525	112539	14
Deletion	Chr4	156090	156097	7
Deletion	Chr5	2207251	2207256	5
Deletion	Chr2	3913400	3913402	2	LOC_Os02g07560
Deletion	Chr2	3996203	3996204	1	LOC_Os02g07680
Deletion	Chr10	4622001	4743000	120999	22
Deletion	Chr10	6007258	6007264	6
Deletion	Chr4	6670807	6670808	1
Deletion	Chr5	7650592	7650598	6
Deletion	Chr11	9999908	9999921	13
Deletion	Chr3	10781447	10781448	1
Deletion	Chr2	11030303	11030304	1
Deletion	Chr6	11041676	11041683	7	LOC_Os06g19390
Deletion	Chr7	11824043	11824044	1
Deletion	Chr4	12486009	12486011	2
Deletion	Chr6	12550132	12550150	18
Deletion	Chr1	13404952	13404955	3
Deletion	Chr5	13503610	13503615	5
Deletion	Chr1	15591771	15591773	2
Deletion	Chr12	15881172	15881180	8	LOC_Os12g27096
Deletion	Chr5	16699410	16699414	4	LOC_Os05g28510
Deletion	Chr3	19681642	19681645	3
Deletion	Chr11	20132294	20132311	17
Deletion	Chr11	24852274	24852287	13
Deletion	Chr4	25979588	25979592	4
Deletion	Chr6	27463952	27463959	7
Deletion	Chr1	27661708	27661716	8
Deletion	Chr2	28018398	28018405	7	LOC_Os02g45980
Deletion	Chr4	28593946	28593953	7
Deletion	Chr3	28683435	28683437	2
Deletion	Chr4	32622327	32622331	4
Deletion	Chr3	33157737	33157741	4
Deletion	Chr4	33957516	33957526	10
Deletion	Chr1	34440210	34440222	12	LOC_Os01g59560
Deletion	Chr1	35835010	35835017	7	LOC_Os01g61910
Deletion	Chr1	36954603	36954604	1
Deletion	Chr1	42025462	42025487	25

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11453811	11453908	98
Insertion	Chr1	21813055	21813139	85
Insertion	Chr10	4527844	4527946	103
Insertion	Chr10	7253186	7253187	2
Insertion	Chr11	16724959	16724964	6
Insertion	Chr4	31684569	31684570	2
Insertion	Chr6	4900651	4900651	1
Insertion	Chr9	14215867	14215867	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2032376	Chr1	41863432	LOC_Os01g72190
Translocation	Chr4	7871808	Chr2	34491837
Translocation	Chr12	12555239	Chr1	1692190
Translocation	Chr12	15238163	Chr2	10483612	LOC_Os02g18064
Translocation	Chr12	15244369	Chr2	10483434	LOC_Os02g18064

Main menu