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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7327267	C-A	HET	SYNONYMOUS_CODING
SBS	Chr1	16793534	A-T	HET	INTERGENIC
SBS	Chr1	17753111	T-C	HET	INTERGENIC
SBS	Chr1	26368444	T-A	HET	UTR_3_PRIME
SBS	Chr1	34055245	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	35325160	A-T	HOMO	INTRON
SBS	Chr1	41368282	T-A	HET	INTRON
SBS	Chr2	4402124	C-T	HOMO	INTERGENIC
SBS	Chr2	7853943	A-T	HET	INTRON
SBS	Chr2	23922661	C-T	HET	INTERGENIC
SBS	Chr2	27000271	C-A	HET	INTERGENIC
SBS	Chr3	16590540	T-G	HET	INTRON
SBS	Chr3	19836710	A-T	HET	SYNONYMOUS_CODING
SBS	Chr3	19836711	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g35788
SBS	Chr3	30411548	A-G	HOMO	INTERGENIC
SBS	Chr4	8908813	G-C	HOMO	INTERGENIC
SBS	Chr4	23575027	C-T	HET	INTERGENIC
SBS	Chr4	33116771	C-T	HET	INTERGENIC
SBS	Chr5	8619142	G-A	HET	INTERGENIC
SBS	Chr5	9344219	G-C	HET	INTERGENIC
SBS	Chr5	9805000	A-T	HET	INTERGENIC
SBS	Chr5	11831464	C-G	HET	INTERGENIC
SBS	Chr5	14858900	C-T	HET	INTRON
SBS	Chr5	25945053	G-A	HET	INTRON
SBS	Chr7	6337189	G-C	HET	INTERGENIC
SBS	Chr7	8994596	T-C	HET	INTRON
SBS	Chr8	17975894	A-C	HET	INTERGENIC
SBS	Chr9	5674370	T-A	HET	INTERGENIC
SBS	Chr9	6498092	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	16033820	T-A	HOMO	INTRON
SBS	Chr10	1970250	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04220
SBS	Chr10	19546145	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g36530
SBS	Chr11	1480409	G-T	HOMO	INTERGENIC
SBS	Chr11	20829930	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	11157391	C-T	HET	INTERGENIC
SBS	Chr12	26336025	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g42370

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	706330	706331	1
Deletion	Chr8	775297	775341	44
Deletion	Chr10	1078429	1078434	5
Deletion	Chr12	2836235	2836257	22	LOC_Os12g06080
Deletion	Chr9	2843673	2843674	1
Deletion	Chr5	5612229	5612248	19
Deletion	Chr12	5633839	5633865	26
Deletion	Chr12	5932736	5932759	23
Deletion	Chr10	6013438	6013448	10
Deletion	Chr9	7514996	7515005	9	LOC_Os09g13030
Deletion	Chr4	8173198	8173199	1
Deletion	Chr9	8253070	8253071	1
Deletion	Chr7	9160357	9160361	4
Deletion	Chr1	10726415	10726424	9
Deletion	Chr12	10794757	10794759	2
Deletion	Chr10	11131001	11141000	9999
Deletion	Chr12	11659415	11659420	5
Deletion	Chr7	11688800	11688802	2
Deletion	Chr7	12154985	12154987	2
Deletion	Chr1	14574548	14574550	2	LOC_Os01g25710
Deletion	Chr6	15636632	15636636	4
Deletion	Chr1	15719436	15719437	1
Deletion	Chr2	16056964	16056972	8
Deletion	Chr1	16544443	16544452	9	LOC_Os01g29507
Deletion	Chr8	16774470	16774472	2
Deletion	Chr4	17451023	17451087	64
Deletion	Chr8	20810743	20810744	1
Deletion	Chr9	21088448	21088449	1
Deletion	Chr7	23940250	23940261	11
Deletion	Chr2	24992909	24992928	19
Deletion	Chr8	27566303	27566306	3
Deletion	Chr2	28479403	28479404	1	LOC_Os02g46660
Deletion	Chr5	29013001	29022000	8999	2
Deletion	Chr2	32283110	32283113	3	LOC_Os02g52790
Deletion	Chr2	34318710	34318711	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14947829	14947848	20
Insertion	Chr2	33244708	33244708	1
Insertion	Chr4	9158939	9158939	1
Insertion	Chr4	25990439	25990440	2
Insertion	Chr5	21421086	21421167	82
Insertion	Chr7	9910144	9910144	1
Insertion	Chr8	7269447	7269448	2
Insertion	Chr10	19502601	19502606	6

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5525361	5526514	LOC_Os08g09530
Inversion	Chr1	20105701	20106611
Inversion	Chr12	26489276	27212138	LOC_Os12g43830
Inversion	Chr12	26489280	27212140	LOC_Os12g43830

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5632013	Chr1	24093297
Translocation	Chr7	5634046	Chr1	24093296	LOC_Os07g10470
Translocation	Chr8	6303539	Chr2	9192297
Translocation	Chr10	6560842	Chr8	19480966
Translocation	Chr10	12591028	Chr5	17280727
Translocation	Chr10	12591935	Chr5	17280736	LOC_Os10g24530
Translocation	Chr10	12592476	Chr4	13572322	LOC_Os10g24540
Translocation	Chr10	21738024	Chr5	29012573	LOC_Os05g50610
Translocation	Chr6	29708618	Chr1	38333447	LOC_Os06g49010
Translocation	Chr6	29708619	Chr1	38343534	LOC_Os06g49010

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