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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28153526	C-T	HET	INTERGENIC
SBS	Chr1	29852780	G-T	HET	INTRON
SBS	Chr1	40366243	G-A	HET	INTERGENIC
SBS	Chr1	41873357	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g72210
SBS	Chr1	41873364	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g72210
SBS	Chr10	6935557	C-T	HET	INTERGENIC
SBS	Chr11	11568447	C-T	HOMO	INTERGENIC
SBS	Chr11	15119214	T-A	HOMO	INTERGENIC
SBS	Chr2	18742844	C-T	HET	INTERGENIC
SBS	Chr2	21185168	G-A	HET	INTERGENIC
SBS	Chr2	21185169	G-A	HET	INTERGENIC
SBS	Chr2	21185805	A-G	HET	INTERGENIC
SBS	Chr2	24514837	C-T	HOMO	INTERGENIC
SBS	Chr2	27500261	C-T	HOMO	INTERGENIC
SBS	Chr2	35746566	T-A	HOMO	INTERGENIC
SBS	Chr3	20594235	A-T	HET	INTERGENIC
SBS	Chr3	20594236	C-T	HET	INTERGENIC
SBS	Chr3	23137006	C-T	HET	INTRON
SBS	Chr3	33251469	C-T	HET	INTERGENIC
SBS	Chr4	12124139	G-C	HET	INTERGENIC
SBS	Chr4	15508538	A-G	HET	INTERGENIC
SBS	Chr4	34574595	A-T	HET	SYNONYMOUS_CODING
SBS	Chr5	16890867	T-A	HOMO	INTRON
SBS	Chr5	25081157	C-G	HET	INTERGENIC
SBS	Chr5	29788183	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51910
SBS	Chr5	2994592	A-C	HET	INTERGENIC
SBS	Chr7	14155409	G-A	HET	INTERGENIC
SBS	Chr7	6656326	T-G	HET	INTERGENIC
SBS	Chr8	10305212	A-G	HET	INTERGENIC
SBS	Chr8	12886720	T-C	HET	INTERGENIC
SBS	Chr8	26322774	C-T	HOMO	INTERGENIC
SBS	Chr9	12064616	A-C	HET	INTERGENIC
SBS	Chr9	15015165	A-T	HET	INTERGENIC
SBS	Chr9	22399477	A-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2675879	2675881	2
Deletion	Chr8	3413001	3449000	35999	9
Deletion	Chr9	4095036	4095037	1
Deletion	Chr4	6549001	6622000	72999	13
Deletion	Chr1	7830182	7830183	1	LOC_Os01g13970
Deletion	Chr8	8223441	8223444	3
Deletion	Chr4	9795457	9795458	1	LOC_Os04g17850
Deletion	Chr5	10614690	10614695	5
Deletion	Chr6	11921268	11921280	12
Deletion	Chr9	12075001	12088000	12999	2
Deletion	Chr3	13479599	13479868	269
Deletion	Chr8	20628429	20628442	13
Deletion	Chr3	21608301	21608314	13
Deletion	Chr9	22496797	22496810	13
Deletion	Chr11	23172825	23172827	2
Deletion	Chr4	24707044	24707052	8	LOC_Os04g41670
Deletion	Chr6	28050866	28050884	18
Deletion	Chr11	28110130	28110148	18
Deletion	Chr2	32934702	32934709	7
Deletion	Chr4	33921574	33921577	3
Deletion	Chr1	38709392	38709398	6

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	10820035	10820035	1
Insertion	Chr11	1599362	1599488	127	LOC_Os11g03960
Insertion	Chr11	587041	587041	1
Insertion	Chr5	10289090	10289101	12
Insertion	Chr5	24225303	24225303	1
Insertion	Chr6	10256443	10256559	117	LOC_Os06g17629
Insertion	Chr7	1653438	1653438	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2472798	2834429	LOC_Os01g05940

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15957561	Chr2	611507
Translocation	Chr6	21336973	Chr4	20208694

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