Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15836000	G-A	HET	INTRON
SBS	Chr1	15836001	G-A	HET	INTRON
SBS	Chr1	20668205	G-A	HET	INTRON
SBS	Chr1	20668206	G-A	HET	INTRON
SBS	Chr1	21079068	C-A	HET	INTRON
SBS	Chr1	25807246	G-A	HET	INTERGENIC
SBS	Chr1	34164390	G-A	HET	INTRON
SBS	Chr1	3874915	T-C	HET	INTERGENIC
SBS	Chr11	12046391	T-C	HET	INTERGENIC
SBS	Chr11	2761387	T-C	HET	INTRON
SBS	Chr11	7391556	G-T	HOMO	INTERGENIC
SBS	Chr11	8420304	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14950
SBS	Chr12	10844427	G-A	HET	INTERGENIC
SBS	Chr12	17542627	G-A	HET	INTERGENIC
SBS	Chr2	17160551	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g28980
SBS	Chr2	6037237	C-T	HOMO	INTERGENIC
SBS	Chr2	6458255	C-T	HOMO	INTERGENIC
SBS	Chr3	20995661	C-A	HET	INTERGENIC
SBS	Chr3	22843833	C-A	HET	INTERGENIC
SBS	Chr3	24849938	C-A	HET	INTERGENIC
SBS	Chr3	29050246	G-A	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr4	21042414	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g34740
SBS	Chr4	26826213	A-G	HET	INTERGENIC
SBS	Chr4	33090825	G-A	HET	INTERGENIC
SBS	Chr5	10070127	A-G	HET	INTERGENIC
SBS	Chr6	23054790	C-T	HET	INTRON
SBS	Chr6	27600432	A-G	HOMO	INTERGENIC
SBS	Chr6	28441103	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g46860
SBS	Chr6	28874354	G-C	HOMO	INTERGENIC
SBS	Chr6	29159055	C-T	HOMO	INTERGENIC
SBS	Chr7	10608673	C-T	HOMO	INTERGENIC
SBS	Chr7	2322893	G-A	HET	INTERGENIC
SBS	Chr8	11114777	C-T	HET	INTERGENIC
SBS	Chr8	24638265	T-A	HET	INTERGENIC
SBS	Chr8	3804896	G-A	HOMO	INTERGENIC
SBS	Chr9	3598202	C-T	HET	STOP_GAINED	LOC_Os09g07300
SBS	Chr9	5171889	C-T	HET	INTERGENIC

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1820204	1820207	3	LOC_Os01g04140
Deletion	Chr4	1937797	1937798	1
Deletion	Chr3	2177043	2177044	1
Deletion	Chr9	2759980	2759981	1
Deletion	Chr4	3100936	3100939	3
Deletion	Chr10	3391141	3391143	2
Deletion	Chr11	3400143	3400144	1
Deletion	Chr8	3402809	3402810	1
Deletion	Chr11	4439363	4439367	4
Deletion	Chr7	4655001	4743000	87999	11
Deletion	Chr8	4767461	4767463	2
Deletion	Chr9	4861332	4861333	1	LOC_Os09g09090
Deletion	Chr3	6188480	6188481	1
Deletion	Chr11	6207435	6207443	8
Deletion	Chr3	6692915	6692916	1
Deletion	Chr8	6760515	6760516	1
Deletion	Chr2	6894596	6894597	1	LOC_Os02g13010
Deletion	Chr9	7835081	7835089	8
Deletion	Chr4	9786562	9786563	1	LOC_Os04g17840
Deletion	Chr1	11100160	11100164	4
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr6	11262527	11262531	4
Deletion	Chr4	12856236	12856271	35
Deletion	Chr3	13392500	13392501	1
Deletion	Chr8	13660826	13660827	1
Deletion	Chr11	14656656	14656657	1
Deletion	Chr11	15127001	15198000	70999	11
Deletion	Chr7	16460600	16460601	1
Deletion	Chr5	17700560	17700561	1
Deletion	Chr8	18059509	18059529	20
Deletion	Chr2	20195535	20195536	1
Deletion	Chr6	20321739	20321805	66
Deletion	Chr9	21568722	21568731	9
Deletion	Chr2	21801732	21801734	2
Deletion	Chr7	23433878	23433882	4
Deletion	Chr11	23887425	23887426	1	LOC_Os11g40060
Deletion	Chr12	25678009	25678015	6	LOC_Os12g41450
Deletion	Chr11	28591618	28591619	1
Deletion	Chr6	29433415	29433416	1
Deletion	Chr5	29701218	29701219	1
Deletion	Chr4	32340699	32340782	83
Deletion	Chr3	33539425	33539432	7
Deletion	Chr3	34441956	34441965	9
Deletion	Chr1	41958001	42318000	359999	57
Deletion	Chr1	42119019	42119022	3

Insertions: 32

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11869720	11869782	63
Insertion	Chr1	14535519	14535519	1
Insertion	Chr1	16220855	16220855	1
Insertion	Chr1	27352502	27352502	1
Insertion	Chr1	31772635	31772635	1
Insertion	Chr1	34932501	34932501	1
Insertion	Chr10	446581	446582	2
Insertion	Chr10	4523351	4523351	1
Insertion	Chr10	6815578	6815578	1
Insertion	Chr11	11895096	11895096	1
Insertion	Chr11	25831477	25831490	14
Insertion	Chr11	26729629	26729629	1
Insertion	Chr12	13719982	13719982	1
Insertion	Chr2	12409836	12409847	12
Insertion	Chr2	3423098	3423109	12
Insertion	Chr2	9609850	9609853	4
Insertion	Chr4	10478822	10478822	1
Insertion	Chr4	22703024	22703024	1
Insertion	Chr4	23480747	23480748	2
Insertion	Chr4	23598885	23599011	127
Insertion	Chr5	13350245	13350245	1
Insertion	Chr5	15436302	15436302	1
Insertion	Chr5	1633003	1633003	1
Insertion	Chr5	22608408	22608415	8
Insertion	Chr5	3024186	3024186	1
Insertion	Chr6	13982283	13982283	1
Insertion	Chr6	17884405	17884405	1
Insertion	Chr7	17430499	17430501	3
Insertion	Chr7	18198663	18198663	1
Insertion	Chr7	2170868	2170868	1
Insertion	Chr7	24941088	24941088	1
Insertion	Chr8	10038280	10038280	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12799706	12837283

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9725529	Chr4	10817573
Translocation	Chr11	14230005	Chr7	15472209	2
Translocation	Chr5	14965971	Chr4	27007162
Translocation	Chr10	17156069	Chr9	12552917	LOC_Os10g32760
Translocation	Chr11	19842657	Chr1	19348949

Main menu