Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13722666	C-T	HET	INTERGENIC
SBS	Chr1	15005847	A-T	HET	INTERGENIC
SBS	Chr1	15240528	C-G	HET	INTERGENIC
SBS	Chr1	18968292	C-T	HET	INTRON
SBS	Chr1	26181565	T-C	HOMO	INTERGENIC
SBS	Chr1	34363339	A-G	HOMO	INTERGENIC
SBS	Chr10	18123971	A-C	HET	INTERGENIC
SBS	Chr10	18123975	G-A	HET	INTERGENIC
SBS	Chr11	23651791	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39710
SBS	Chr2	3959736	T-A	HET	INTERGENIC
SBS	Chr2	6193169	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr2	6366855	C-A	HET	INTRON
SBS	Chr3	1533890	G-A	HET	INTERGENIC
SBS	Chr3	25839186	C-T	HET	INTERGENIC
SBS	Chr4	19107299	A-G	HOMO	INTRON
SBS	Chr4	24661177	G-T	HET	INTERGENIC
SBS	Chr4	27771422	T-A	HOMO	INTERGENIC
SBS	Chr4	31156737	G-A	HET	INTERGENIC
SBS	Chr4	31156738	G-A	HET	INTERGENIC
SBS	Chr4	34328568	C-T	HET	INTERGENIC
SBS	Chr5	19782453	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33630
SBS	Chr5	23568559	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g40110
SBS	Chr5	732481	C-A	HET	INTERGENIC
SBS	Chr6	14394267	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24550
SBS	Chr6	17200694	A-G	HOMO	INTERGENIC
SBS	Chr7	7930707	G-A	HET	INTERGENIC
SBS	Chr8	3311006	G-A	HET	INTERGENIC
SBS	Chr8	5035168	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	15757827	C-A	HET	INTRON
SBS	Chr9	2568185	C-T	HOMO	INTERGENIC
SBS	Chr9	4810717	T-C	HOMO	INTERGENIC

Deletions: 44

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	614294	614296	2
Deletion	Chr6	1097476	1097477	1
Deletion	Chr1	2160617	2160618	1
Deletion	Chr1	2338688	2338689	1
Deletion	Chr8	2710572	2710573	1
Deletion	Chr4	3074877	3074878	1
Deletion	Chr10	3212841	3212842	1
Deletion	Chr9	3419346	3419350	4
Deletion	Chr8	3805378	3805379	1
Deletion	Chr9	4656852	4656853	1	LOC_Os09g08830
Deletion	Chr9	5717969	5717970	1
Deletion	Chr9	5913166	5913170	4
Deletion	Chr12	6176575	6176576	1
Deletion	Chr3	6277319	6277327	8
Deletion	Chr3	6550189	6550192	3
Deletion	Chr3	7389862	7389868	6
Deletion	Chr8	7866161	7866205	44
Deletion	Chr4	8662915	8662916	1
Deletion	Chr2	9355000	9355065	65	LOC_Os02g16410
Deletion	Chr8	11766886	11766887	1
Deletion	Chr7	12144892	12144893	1
Deletion	Chr12	12290997	12290998	1	LOC_Os12g21830
Deletion	Chr7	14052385	14052386	1
Deletion	Chr9	14321308	14321312	4	LOC_Os09g24090
Deletion	Chr6	14638451	14638453	2
Deletion	Chr3	14810687	14810693	6
Deletion	Chr11	14937244	14937246	2
Deletion	Chr2	15625297	15625382	85
Deletion	Chr9	16438837	16438839	2
Deletion	Chr7	16558856	16558946	90
Deletion	Chr4	16735313	16735315	2
Deletion	Chr2	18426070	18426071	1
Deletion	Chr12	18795657	18795658	1
Deletion	Chr1	19586970	19586971	1
Deletion	Chr10	20502589	20502590	1
Deletion	Chr2	21803328	21803329	1
Deletion	Chr6	21937367	21937427	60
Deletion	Chr7	22437384	22437385	1	LOC_Os07g37470
Deletion	Chr11	23833692	23833745	53
Deletion	Chr5	24917968	24917969	1
Deletion	Chr7	24922444	24922448	4
Deletion	Chr1	25807251	25807252	1
Deletion	Chr8	26611591	26611607	16
Deletion	Chr1	36569851	36569852	1

Insertions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22565374	22565374	1
Insertion	Chr1	37753406	37753411	6
Insertion	Chr10	6921967	6921967	1
Insertion	Chr11	1121641	1121641	1
Insertion	Chr11	15053924	15053930	7
Insertion	Chr11	27611690	27611691	2
Insertion	Chr3	16144791	16144791	1
Insertion	Chr3	20862287	20862327	41	LOC_Os03g37620
Insertion	Chr3	24138400	24138400	1	LOC_Os03g43290
Insertion	Chr3	25665986	25666085	100
Insertion	Chr3	30819947	30819948	2
Insertion	Chr3	3953299	3953340	42	LOC_Os03g07780
Insertion	Chr4	8423163	8423166	4
Insertion	Chr4	8642874	8642935	62
Insertion	Chr5	1943182	1943182	1
Insertion	Chr5	9917718	9917718	1
Insertion	Chr6	11423230	11423231	2
Insertion	Chr7	8577566	8577566	1
Insertion	Chr8	12234981	12235030	50
Insertion	Chr8	17023936	17023936	1
Insertion	Chr8	17023937	17023937	1
Insertion	Chr8	8733100	8733100	1
Insertion	Chr9	17555982	17555986	5
Insertion	Chr9	8498045	8498045	1	LOC_Os09g14390

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31040897	31114415	LOC_Os04g52240
Inversion	Chr4	31040912	31118251	LOC_Os04g52240

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1711869	Chr1	30338128
Translocation	Chr10	5984045	Chr9	564996	2
Translocation	Chr12	8221191	Chr4	3485806	LOC_Os12g14420
Translocation	Chr12	11184206	Chr6	12783458
Translocation	Chr12	11184208	Chr6	12783920
Translocation	Chr6	18190270	Chr3	8985228
Translocation	Chr11	22131702	Chr6	12651485	LOC_Os06g21890
Translocation	Chr4	22546947	Chr1	7916899

Main menu