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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10432494	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g18530
SBS	Chr1	35504355	G-C	HOMO	INTRON
SBS	Chr1	41330845	G-A	HET	INTERGENIC
SBS	Chr2	222955	A-G	HET	INTERGENIC
SBS	Chr2	7061309	G-A	HET	INTERGENIC
SBS	Chr2	19275421	A-G	HET	INTERGENIC
SBS	Chr2	19383239	C-T	HET	INTERGENIC
SBS	Chr3	4376236	G-A	HET	INTERGENIC
SBS	Chr3	11057646	A-T	HET	INTRON
SBS	Chr3	13048134	G-A	HET	INTERGENIC
SBS	Chr3	14493320	T-C	HET	INTERGENIC
SBS	Chr3	20998312	G-A	HET	INTERGENIC
SBS	Chr3	22869279	C-T	HET	INTERGENIC
SBS	Chr3	28879368	G-A	HOMO	INTRON
SBS	Chr3	30981508	T-G	HET	INTRON
SBS	Chr4	1462452	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03410
SBS	Chr4	9537826	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	12082608	C-T	HET	INTERGENIC
SBS	Chr4	13325012	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	17428572	G-A	HET	INTRON
SBS	Chr4	17599278	T-A	HET	INTERGENIC
SBS	Chr4	22404955	T-C	HOMO	INTERGENIC
SBS	Chr4	23338071	G-T	HET	INTERGENIC
SBS	Chr4	27491433	G-A	HET	INTERGENIC
SBS	Chr5	10418057	C-T	HOMO	INTERGENIC
SBS	Chr5	11620300	G-A	HET	INTERGENIC
SBS	Chr5	11689606	T-C	HOMO	INTERGENIC
SBS	Chr6	2100283	T-A	HET	UTR_3_PRIME
SBS	Chr6	16515728	T-A	HET	STOP_GAINED	LOC_Os06g28980
SBS	Chr6	29408785	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	11229534	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g18970
SBS	Chr7	28420091	A-T	HET	INTERGENIC
SBS	Chr8	2596687	C-T	HOMO	INTERGENIC
SBS	Chr8	11140963	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g18170
SBS	Chr8	15962583	C-T	HET	INTERGENIC
SBS	Chr9	7260586	T-C	HOMO	INTERGENIC
SBS	Chr10	12266720	C-G	HOMO	INTERGENIC
SBS	Chr11	1946980	C-T	HET	INTERGENIC
SBS	Chr11	10632272	C-G	HOMO	INTERGENIC
SBS	Chr11	11988323	A-G	HOMO	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	30156	30175	19	LOC_Os04g01030
Deletion	Chr10	1134019	1134029	10
Deletion	Chr9	2934881	2934882	1
Deletion	Chr10	3555803	3555804	1
Deletion	Chr5	4598951	4598956	5
Deletion	Chr9	4913846	4913847	1
Deletion	Chr1	5336753	5336782	29	LOC_Os01g10160
Deletion	Chr8	6447952	6447953	1
Deletion	Chr9	6757952	6757954	2
Deletion	Chr7	7576260	7576278	18
Deletion	Chr9	7888570	7888576	6
Deletion	Chr4	8576407	8576425	18
Deletion	Chr12	9649695	9649724	29	LOC_Os12g16830
Deletion	Chr5	9828976	9828986	10	LOC_Os05g17160
Deletion	Chr12	12005109	12005195	86
Deletion	Chr6	12012081	12012082	1
Deletion	Chr3	13503101	13503105	4
Deletion	Chr2	13636210	13636252	42
Deletion	Chr6	14038562	14038563	1
Deletion	Chr9	14183350	14183353	3
Deletion	Chr6	15003075	15003077	2
Deletion	Chr6	15448847	15448849	2
Deletion	Chr1	15748161	15748163	2
Deletion	Chr11	19069264	19069266	2
Deletion	Chr11	20913259	20913261	2
Deletion	Chr10	21053035	21053044	9
Deletion	Chr10	21562550	21562556	6	LOC_Os10g40250
Deletion	Chr4	22336180	22336183	3	LOC_Os04g37520
Deletion	Chr6	24473281	24473286	5
Deletion	Chr2	27283855	27283857	2
Deletion	Chr6	29334764	29334774	10
Deletion	Chr4	30357264	30357265	1
Deletion	Chr1	32534070	32534071	1
Deletion	Chr1	34173335	34173337	2
Deletion	Chr3	34562757	34562849	92

Insertions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	25556801	25556802	2
Insertion	Chr7	22189053	22189054	2
Insertion	Chr1	5943189	5943221	33
Insertion	Chr1	7884895	7884957	63
Insertion	Chr1	16891207	16891207	1
Insertion	Chr2	16521730	16521811	82
Insertion	Chr2	25293344	25293344	1
Insertion	Chr3	26251958	26251958	1
Insertion	Chr4	434087	434181	95
Insertion	Chr4	2332773	2332773	1
Insertion	Chr4	10422845	10422845	1
Insertion	Chr4	19529463	19529463	1
Insertion	Chr4	20747361	20747361	1
Insertion	Chr4	27312022	27312025	4
Insertion	Chr5	8820599	8820599	1
Insertion	Chr6	8251722	8251851	130	LOC_Os06g14670
Insertion	Chr6	11144460	11144484	25	LOC_Os06g19570
Insertion	Chr8	27723080	27723121	42
Insertion	Chr8	28032789	28032789	1
Insertion	Chr9	1246874	1246874	1
Insertion	Chr9	15847898	15847901	4
Insertion	Chr10	1402197	1402197	1
Insertion	Chr11	4214491	4214501	11

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	3405240	4126119
Inversion	Chr3	3405247	4126135
Inversion	Chr1	31774181	32529690

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7323623	Chr6	14828901
Translocation	Chr4	8847892	Chr2	15425884	2
Translocation	Chr10	13370893	Chr3	4087374	LOC_Os03g07994
Translocation	Chr10	15800901	Chr4	13170994
Translocation	Chr8	15934961	Chr7	6243021
Translocation	Chr10	22644010	Chr8	19749990

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