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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22313842	G-A	HET	INTERGENIC
SBS	Chr1	29099985	G-A	HET	INTERGENIC
SBS	Chr1	29210117	G-A	HET	INTERGENIC
SBS	Chr1	5092598	A-G	HET	INTERGENIC
SBS	Chr11	13352660	G-T	HOMO	INTERGENIC
SBS	Chr11	4462553	C-A	HOMO	INTERGENIC
SBS	Chr12	12117870	G-T	HOMO	INTERGENIC
SBS	Chr12	2057264	T-A	HET	INTERGENIC
SBS	Chr12	21766548	C-T	HOMO	INTERGENIC
SBS	Chr12	3291165	C-A	HET	INTERGENIC
SBS	Chr2	23369682	G-A	HET	INTRON
SBS	Chr2	32319213	A-T	HET	INTERGENIC
SBS	Chr2	34820028	A-G	HET	INTERGENIC
SBS	Chr2	4228468	C-T	HET	INTERGENIC
SBS	Chr3	20462487	C-T	HOMO	INTERGENIC
SBS	Chr4	1304862	C-G	HOMO	INTERGENIC
SBS	Chr4	13440818	T-C	HOMO	INTERGENIC
SBS	Chr4	6735035	T-C	HOMO	INTERGENIC
SBS	Chr4	8107248	G-C	HOMO	INTERGENIC
SBS	Chr5	13122448	C-A	HET	INTERGENIC
SBS	Chr5	23534059	A-T	HET	INTERGENIC
SBS	Chr5	29004962	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50600
SBS	Chr5	7663366	G-A	HOMO	INTERGENIC
SBS	Chr7	11202939	G-A	HOMO	INTRON
SBS	Chr8	19623274	C-T	HET	INTERGENIC
SBS	Chr8	6964862	C-A	HET	INTERGENIC
SBS	Chr8	7279811	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12350
SBS	Chr9	1238183	A-G	HOMO	INTRON

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2502188	2502190	2
Deletion	Chr4	2571072	2571073	1	LOC_Os04g05160
Deletion	Chr7	2764256	2764258	2
Deletion	Chr4	2863397	2863412	15
Deletion	Chr3	2894085	2894086	1
Deletion	Chr3	5194385	5194399	14
Deletion	Chr4	6530001	6548000	17999	LOC_Os04g11930
Deletion	Chr4	7333672	7333680	8	LOC_Os04g13240
Deletion	Chr12	8395674	8395680	6
Deletion	Chr6	8460545	8460546	1
Deletion	Chr7	8593001	8614000	20999	4
Deletion	Chr12	9089519	9089526	7	LOC_Os12g15950
Deletion	Chr9	9170001	9190000	19999	3
Deletion	Chr7	9235565	9235570	5
Deletion	Chr11	9511585	9511589	4
Deletion	Chr8	9576001	9594000	17999	LOC_Os08g15860
Deletion	Chr5	9896915	9896916	1
Deletion	Chr6	10246262	10246263	1
Deletion	Chr9	10345091	10345094	3
Deletion	Chr5	10874574	10874575	1
Deletion	Chr9	11027001	11051000	23999	2
Deletion	Chr12	12919640	12919643	3
Deletion	Chr1	13967298	13967299	1
Deletion	Chr12	14140001	14162000	21999	2
Deletion	Chr5	15928692	15928711	19
Deletion	Chr6	16127347	16127348	1	LOC_Os06g28350
Deletion	Chr2	16750475	16750481	6	LOC_Os02g28340
Deletion	Chr1	17004384	17004394	10
Deletion	Chr8	18992263	18992264	1
Deletion	Chr10	21941471	21941473	2
Deletion	Chr2	22307213	22307220	7
Deletion	Chr6	24646001	24661000	14999	2
Deletion	Chr5	25414028	25414029	1
Deletion	Chr1	25823676	25823677	1
Deletion	Chr8	26466001	26481000	14999	LOC_Os08g43120
Deletion	Chr6	26540266	26540274	8
Deletion	Chr7	28025231	28025233	2
Deletion	Chr3	30128001	30148000	19999	5

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19945453	19945453	1
Insertion	Chr1	20515110	20515110	1
Insertion	Chr1	20580547	20580628	82
Insertion	Chr1	22788535	22788560	26
Insertion	Chr10	13245831	13245832	2
Insertion	Chr10	14701852	14701854	3
Insertion	Chr10	3923863	3923863	1
Insertion	Chr11	22403007	22403008	2
Insertion	Chr11	27044991	27044991	1
Insertion	Chr12	12869292	12869292	1
Insertion	Chr12	15107656	15107657	2
Insertion	Chr3	12636205	12636212	8
Insertion	Chr3	16642693	16642696	4
Insertion	Chr3	23141900	23141905	6
Insertion	Chr4	2560158	2560158	1
Insertion	Chr5	11493835	11493841	7
Insertion	Chr5	11965739	11965742	4
Insertion	Chr6	20074114	20074157	44
Insertion	Chr7	9799179	9799180	2
Insertion	Chr9	18478348	18478348	1
Insertion	Chr9	7769601	7769602	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	20117306	20547692
Inversion	Chr12	21731437	21784966
Inversion	Chr12	21731446	21784978
Inversion	Chr11	22238932	22649100
Inversion	Chr11	22239280	22686831
Inversion	Chr2	29037884	29831980
Inversion	Chr4	30686209	30770987	LOC_Os04g51786
Inversion	Chr4	30686220	30770996	LOC_Os04g51786

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3105428	Chr3	25259158
Translocation	Chr3	24819508	Chr1	2790235	LOC_Os01g05820

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