Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34131811	C-T	HET	INTERGENIC
SBS	Chr1	7505780	G-A	HET	INTERGENIC
SBS	Chr10	1926718	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04140
SBS	Chr10	22797520	C-T	HET	INTERGENIC
SBS	Chr10	7449569	T-A	HET	INTERGENIC
SBS	Chr11	21663765	C-T	HET	INTERGENIC
SBS	Chr11	8444248	G-A	HET	INTRON
SBS	Chr12	12963247	A-C	HET	INTERGENIC
SBS	Chr12	15179537	A-T	HET	INTERGENIC
SBS	Chr12	24301201	C-T	HOMO	INTERGENIC
SBS	Chr12	26172611	T-A	HOMO	INTERGENIC
SBS	Chr12	6955435	G-A	HET	INTERGENIC
SBS	Chr12	8228545	C-T	HET	INTERGENIC
SBS	Chr2	5296153	C-T	HET	INTERGENIC
SBS	Chr3	18824667	A-G	HOMO	INTERGENIC
SBS	Chr3	7393281	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g13670
SBS	Chr5	24304180	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g41510
SBS	Chr5	29156763	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50830
SBS	Chr5	29935579	C-A	HET	INTERGENIC
SBS	Chr6	14113135	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24120
SBS	Chr6	22937871	A-G	HET	INTERGENIC
SBS	Chr6	29371273	C-T	HET	INTERGENIC
SBS	Chr7	10545638	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17830
SBS	Chr7	20189996	C-T	HET	INTERGENIC
SBS	Chr8	10447295	A-C	HET	INTERGENIC
SBS	Chr8	152579	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01220
SBS	Chr8	2049849	C-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	248094	248096	2
Deletion	Chr5	2327734	2327737	3
Deletion	Chr9	2960389	2960402	13
Deletion	Chr6	3334729	3334730	1
Deletion	Chr2	3875396	3875399	3
Deletion	Chr9	5563905	5563906	1	LOC_Os09g10220
Deletion	Chr5	6298731	6298734	3
Deletion	Chr3	8055450	8055465	15
Deletion	Chr6	9599413	9599417	4
Deletion	Chr4	10720330	10720331	1	LOC_Os04g19270
Deletion	Chr12	11024914	11024915	1
Deletion	Chr11	11210416	11210426	10
Deletion	Chr5	12185490	12185492	2	LOC_Os05g20760
Deletion	Chr8	12304307	12304310	3
Deletion	Chr12	13243779	13243780	1
Deletion	Chr9	14446301	14446302	1
Deletion	Chr12	15017101	15017104	3
Deletion	Chr4	15403511	15403516	5	LOC_Os04g26420
Deletion	Chr11	18279706	18279715	9
Deletion	Chr12	19199763	19199765	2
Deletion	Chr6	20664411	20664417	6	LOC_Os06g35460
Deletion	Chr3	21497829	21497849	20
Deletion	Chr7	21988201	21988214	13
Deletion	Chr8	23848876	23848882	6
Deletion	Chr4	26317482	26317496	14
Deletion	Chr8	26392924	26392925	1
Deletion	Chr5	29526667	29526683	16	LOC_Os05g51490

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	5536240	5536330	91
Insertion	Chr2	30341645	30341694	50
Insertion	Chr4	22733580	22733580	1
Insertion	Chr6	10988813	10988813	1
Insertion	Chr7	26670550	26670551	2
Insertion	Chr7	4280190	4280190	1
Insertion	Chr8	13853042	13853044	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7890378	8472148
Inversion	Chr3	34461413	35119989	LOC_Os03g61950
Inversion	Chr3	34461423	35119997	LOC_Os03g61950

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2048849	Chr1	292785
Translocation	Chr7	7890402	Chr6	21258710	LOC_Os06g36270
Translocation	Chr7	8472158	Chr6	21258132
Translocation	Chr4	25766359	Chr2	4240113

Main menu