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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	1483523	T-C	HET	INTERGENIC
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	35023462	A-G	HET	INTERGENIC
SBS	Chr2	4183787	G-T	HET	INTERGENIC
SBS	Chr3	22671107	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g40780
SBS	Chr3	23783851	G-A	HET	INTERGENIC
SBS	Chr3	5271418	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10334
SBS	Chr3	8260727	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15120
SBS	Chr4	25226347	G-A	HET	INTRON
SBS	Chr4	32781000	C-A	HET	INTERGENIC
SBS	Chr4	34109512	G-T	HET	INTERGENIC
SBS	Chr5	20647444	T-G	HET	INTRON
SBS	Chr6	11334885	C-T	HET	INTERGENIC
SBS	Chr6	11334886	A-T	HET	INTERGENIC
SBS	Chr6	28201553	A-T	HET	INTERGENIC
SBS	Chr6	4052973	C-A	HET	INTERGENIC
SBS	Chr6	4667803	C-G	HET	INTRON
SBS	Chr7	12378092	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	1586084	G-A	HET	INTERGENIC
SBS	Chr7	17511197	A-T	HET	INTERGENIC
SBS	Chr7	17610008	T-C	HET	INTERGENIC
SBS	Chr7	18752262	C-T	HET	INTERGENIC
SBS	Chr7	21086638	G-T	HET	INTERGENIC
SBS	Chr7	7031246	T-A	HET	INTERGENIC
SBS	Chr8	21750557	C-T	HOMO	INTERGENIC
SBS	Chr9	14752688	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24760
SBS	Chr9	5711829	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10450

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1788947	1788948	1
Deletion	Chr10	2722884	2722909	25
Deletion	Chr10	4808960	4808970	10
Deletion	Chr6	7088001	7285000	196999	31
Deletion	Chr6	7894842	7894866	24	LOC_Os06g14150
Deletion	Chr2	9439103	9439105	2
Deletion	Chr2	11930204	11930205	1	LOC_Os02g20260
Deletion	Chr2	12455477	12455480	3
Deletion	Chr2	13787625	13787626	1
Deletion	Chr12	18996140	18996141	1
Deletion	Chr10	19821945	19821946	1
Deletion	Chr9	21429585	21429586	1
Deletion	Chr6	21967735	21967759	24
Deletion	Chr12	25326355	25326362	7
Deletion	Chr5	26013397	26013398	1
Deletion	Chr5	28439124	28439131	7
Deletion	Chr1	34270916	34270917	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13763923	13763923	1
Insertion	Chr1	2133681	2133681	1
Insertion	Chr1	37492112	37492115	4	LOC_Os01g64600
Insertion	Chr10	7080943	7080943	1
Insertion	Chr11	16006926	16006927	2
Insertion	Chr11	16714835	16714836	2
Insertion	Chr12	13935481	13935481	1
Insertion	Chr12	15920631	15920631	1
Insertion	Chr2	11922011	11922013	3
Insertion	Chr2	9609950	9609965	16
Insertion	Chr5	11103006	11103016	11
Insertion	Chr6	30585089	30585089	1
Insertion	Chr8	22800889	22800889	1
Insertion	Chr8	2754604	2754604	1
Insertion	Chr9	111531	111532	2
Insertion	Chr9	21429693	21429693	1
Insertion	Chr9	21573886	21574005	120

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	147509	272435
Inversion	Chr5	1010885	1684505	LOC_Os05g02810
Inversion	Chr5	1398841	1684504
Inversion	Chr12	15182647	15321947
Inversion	Chr7	23070367	23244728
Inversion	Chr7	23070386	23244780
Inversion	Chr6	23720891	23930688	LOC_Os06g40190
Inversion	Chr1	42325652	42624478	LOC_Os01g73570
Inversion	Chr1	42325657	42624490	LOC_Os01g73570

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	44561	Chr4	7742301
Translocation	Chr9	44594	Chr4	7547059
Translocation	Chr11	147514	Chr1	27841319	LOC_Os01g48540
Translocation	Chr11	272437	Chr1	27852507	LOC_Os01g48570
Translocation	Chr7	1583570	Chr6	23720914
Translocation	Chr7	1589713	Chr6	23930701	LOC_Os06g40190
Translocation	Chr7	1969104	Chr2	20513513
Translocation	Chr11	6602818	Chr2	4170016
Translocation	Chr11	26738186	Chr2	18311741	LOC_Os02g30730
Translocation	Chr8	27374378	Chr6	2829531

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