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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21745868	A-C	HOMO	INTERGENIC
SBS	Chr1	36199303	G-T	HET	INTERGENIC
SBS	Chr1	42237932	G-T	HET	INTERGENIC
SBS	Chr10	981227	G-A	HET	INTERGENIC
SBS	Chr11	12773704	G-T	HOMO	INTERGENIC
SBS	Chr11	21002210	G-A	HOMO	INTERGENIC
SBS	Chr12	10258420	C-T	HOMO	INTRON
SBS	Chr12	14158368	T-A	HOMO	INTERGENIC
SBS	Chr2	14342695	A-T	HET	INTRON
SBS	Chr2	24113895	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g39900
SBS	Chr2	27791562	C-T	HET	INTRON
SBS	Chr2	31422415	G-T	HET	INTERGENIC
SBS	Chr2	3375739	G-A	HET	INTERGENIC
SBS	Chr2	3443696	A-G	HET	INTRON
SBS	Chr3	3433900	G-T	HET	SYNONYMOUS_CODING
SBS	Chr4	24298433	C-T	HOMO	INTRON
SBS	Chr4	24298435	C-T	HOMO	INTRON
SBS	Chr6	16058969	T-C	HET	INTRON
SBS	Chr6	7011152	C-A	HET	INTERGENIC
SBS	Chr6	8791176	A-G	HOMO	INTERGENIC
SBS	Chr7	15976466	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g27420
SBS	Chr9	17659428	C-T	HOMO	INTERGENIC
SBS	Chr9	17659429	G-A	HOMO	INTERGENIC
SBS	Chr9	5301122	T-C	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	168050	168054	4
Deletion	Chr1	3021762	3021763	1
Deletion	Chr12	3892001	3910000	17999	2
Deletion	Chr5	3946470	3946471	1
Deletion	Chr4	5348461	5348465	4
Deletion	Chr10	5581938	5581939	1
Deletion	Chr7	7075879	7075883	4
Deletion	Chr7	7614990	7614991	1
Deletion	Chr5	9479663	9479671	8
Deletion	Chr8	9819022	9819038	16
Deletion	Chr2	11677537	11677539	2
Deletion	Chr1	11985496	11985499	3
Deletion	Chr1	14004001	14024000	19999	4
Deletion	Chr9	17659904	17659905	1
Deletion	Chr5	17712755	17712764	9
Deletion	Chr5	18703039	18703044	5
Deletion	Chr1	21090784	21090786	2
Deletion	Chr7	21192256	21192257	1
Deletion	Chr3	23913283	23913285	2
Deletion	Chr7	24930686	24930687	1
Deletion	Chr1	25523427	25523437	10
Deletion	Chr11	26537400	26537401	1
Deletion	Chr11	27065427	27065430	3
Deletion	Chr11	27065530	27065535	5

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5752107	5752107	1
Insertion	Chr11	17775388	17775389	2
Insertion	Chr11	21229125	21229126	2
Insertion	Chr11	27074008	27074008	1
Insertion	Chr12	10836618	10836618	1
Insertion	Chr12	20192011	20192011	1
Insertion	Chr2	16603579	16603638	60
Insertion	Chr2	34251808	34251809	2
Insertion	Chr2	35571580	35571580	1
Insertion	Chr3	16145245	16145248	4
Insertion	Chr5	10082770	10082770	1
Insertion	Chr5	5347244	5347244	1
Insertion	Chr9	16353115	16353116	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2099564	2676617
Inversion	Chr5	2099572	2676628
Inversion	Chr1	14003759	14100468	LOC_Os01g24860
Inversion	Chr1	14024723	14100470
Inversion	Chr3	22439216	22442221
Inversion	Chr3	22439221	22442221

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	70365	Chr5	29805371
Translocation	Chr12	6816087	Chr4	17599704
Translocation	Chr11	27437919	Chr7	25323789

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