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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10404460	A-G	HET	SPLICE_SITE_DONOR	LOC_Os01g18500
SBS	Chr1	26394294	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g46380
SBS	Chr1	28962461	C-T	HET	INTERGENIC
SBS	Chr10	11348269	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21980
SBS	Chr10	11348270	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21980
SBS	Chr10	12914598	A-G	HET	INTERGENIC
SBS	Chr10	7854407	C-T	HET	INTERGENIC
SBS	Chr11	15196680	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	17827027	T-C	HET	INTERGENIC
SBS	Chr11	24648405	A-T	HET	INTRON
SBS	Chr12	11877891	C-T	HET	INTRON
SBS	Chr12	15260540	G-T	HET	INTERGENIC
SBS	Chr3	10970346	A-G	HET	INTERGENIC
SBS	Chr3	21249331	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	4063767	A-G	HOMO	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	1998944	G-A	HET	INTERGENIC
SBS	Chr4	27644425	C-A	HET	INTERGENIC
SBS	Chr4	34452790	A-T	HET	INTRON
SBS	Chr5	26223390	A-G	HET	INTERGENIC
SBS	Chr5	26668448	A-T	HET	INTERGENIC
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr6	22841878	G-C	HET	INTERGENIC
SBS	Chr6	5481990	A-G	HET	INTERGENIC
SBS	Chr7	21715954	C-T	HET	INTERGENIC
SBS	Chr7	7188318	G-A	HET	INTERGENIC
SBS	Chr7	7758335	T-C	HET	INTERGENIC
SBS	Chr7	8015051	C-T	HET	INTRON
SBS	Chr8	15307845	G-A	HOMO	INTRON
SBS	Chr8	6762455	G-T	HET	INTRON
SBS	Chr8	6762456	G-T	HET	INTRON
SBS	Chr9	16723758	A-T	HET	INTERGENIC
SBS	Chr9	3987949	C-T	HET	INTRON

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1959100	1959102	2
Deletion	Chr5	3345001	3457000	111999	17
Deletion	Chr5	3571557	3571560	3
Deletion	Chr3	3707691	3707751	60	LOC_Os03g07270
Deletion	Chr5	3936927	3936929	2
Deletion	Chr8	5915829	5915832	3
Deletion	Chr8	6240565	6240584	19
Deletion	Chr10	6695189	6695273	84
Deletion	Chr11	6844094	6844105	11
Deletion	Chr11	6950150	6950153	3	LOC_Os11g12440
Deletion	Chr9	6953482	6953485	3
Deletion	Chr3	7300112	7300113	1
Deletion	Chr2	8468172	8468176	4
Deletion	Chr4	9061678	9061679	1
Deletion	Chr10	9503001	9601000	97999	15
Deletion	Chr8	11002611	11002629	18
Deletion	Chr5	11598476	11598479	3
Deletion	Chr4	12787751	12787752	1
Deletion	Chr5	12901257	12901264	7
Deletion	Chr8	13792219	13792279	60
Deletion	Chr1	16404901	16404910	9
Deletion	Chr10	16754143	16754154	11
Deletion	Chr4	18726926	18726938	12
Deletion	Chr4	18884108	18884112	4
Deletion	Chr7	18968654	18968710	56	LOC_Os07g31900
Deletion	Chr5	19696785	19696786	1
Deletion	Chr2	20287278	20287282	4
Deletion	Chr1	20899033	20899061	28
Deletion	Chr3	21780001	21825000	44999	7
Deletion	Chr11	21849129	21849130	1
Deletion	Chr1	22572221	22572222	1
Deletion	Chr7	24756502	24756503	1	LOC_Os07g41320
Deletion	Chr4	26050638	26050639	1
Deletion	Chr8	27625588	27625590	2
Deletion	Chr5	29849191	29849899	708
Deletion	Chr2	35253305	35253311	6	LOC_Os02g57530
Deletion	Chr1	37209665	37209686	21
Deletion	Chr1	37209759	37209762	3

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10348131	10348133	3
Insertion	Chr10	11844458	11844458	1
Insertion	Chr10	14002198	14002198	1
Insertion	Chr10	3244889	3244889	1
Insertion	Chr10	6722414	6722437	24
Insertion	Chr10	9023677	9023680	4
Insertion	Chr11	14583272	14583294	23
Insertion	Chr11	5292125	5292126	2
Insertion	Chr12	16798949	16798952	4
Insertion	Chr12	22991616	22991620	5	LOC_Os12g37460
Insertion	Chr12	2998730	2998730	1
Insertion	Chr2	4467456	4467511	56
Insertion	Chr3	27940344	27940344	1
Insertion	Chr3	28982499	28982500	2
Insertion	Chr4	28820146	28820146	1
Insertion	Chr4	31890704	31890704	1
Insertion	Chr5	11574713	11574713	1
Insertion	Chr5	20416205	20416205	1
Insertion	Chr6	997606	997696	91
Insertion	Chr7	11302752	11302752	1
Insertion	Chr8	12820254	12820254	1
Insertion	Chr8	20767372	20767372	1
Insertion	Chr8	25123692	25123742	51
Insertion	Chr8	5291837	5291837	1
Insertion	Chr9	14772197	14772197	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9502441	9678858
Inversion	Chr10	9597003	9679168
Inversion	Chr9	16725793	16733745	LOC_Os09g27540
Inversion	Chr9	16725797	16733753	LOC_Os09g27540
Inversion	Chr3	21241044	21820094

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1076403	Chr1	30658065
Translocation	Chr6	3024365	Chr2	16275481
Translocation	Chr7	4773878	Chr4	4289191
Translocation	Chr7	4774280	Chr4	4289185	LOC_Os07g09140
Translocation	Chr10	5409188	Chr4	2632481
Translocation	Chr8	5495784	Chr2	10021553
Translocation	Chr10	9678868	Chr1	38974461	LOC_Os01g67134
Translocation	Chr10	9679152	Chr1	38974461	LOC_Os01g67134
Translocation	Chr4	19009544	Chr2	17021801
Translocation	Chr8	19389187	Chr4	18052947
Translocation	Chr11	22529379	Chr9	902063	LOC_Os11g37990

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