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Mutant Information

Mutant Name	FN2898-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2898-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13407273	G-C	HOMO	INTERGENIC
SBS	Chr1	25383974	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g44260
SBS	Chr1	29698272	C-T	HET	INTERGENIC
SBS	Chr1	40415336	G-A	HOMO	INTERGENIC
SBS	Chr10	3868848	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07340
SBS	Chr10	7143346	C-G	HOMO	INTERGENIC
SBS	Chr11	2629298	A-T	HET	INTERGENIC
SBS	Chr2	35383358	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g57780
SBS	Chr2	8404103	G-A	HET	INTERGENIC
SBS	Chr3	33593502	G-A	HOMO	INTRON
SBS	Chr4	20779290	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g34300
SBS	Chr4	5493785	C-T	HET	INTERGENIC
SBS	Chr4	9626315	G-A	HET	INTERGENIC
SBS	Chr5	15908146	C-T	HET	INTERGENIC
SBS	Chr6	17379621	A-G	HET	INTRON
SBS	Chr6	30303746	A-G	HOMO	INTRON
SBS	Chr6	7070379	C-A	HET	INTERGENIC
SBS	Chr8	11868443	G-A	HET	INTERGENIC
SBS	Chr9	15699324	A-T	HET	INTERGENIC
SBS	Chr9	18666330	G-A	HET	INTERGENIC
SBS	Chr9	22346793	G-A	HET	INTERGENIC
SBS	Chr9	9640859	C-T	HOMO	INTRON
SBS	Chr9	9754002	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 63

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	90092	90093	1
Deletion	Chr6	524810	524811	1
Deletion	Chr10	2010069	2010072	3
Deletion	Chr4	2644020	2644021	1
Deletion	Chr5	4013813	4013814	1
Deletion	Chr11	4780578	4780581	3	LOC_Os11g09000
Deletion	Chr5	5075411	5075412	1
Deletion	Chr1	5350356	5350357	1
Deletion	Chr10	5746023	5746024	1
Deletion	Chr6	5766622	5766624	2
Deletion	Chr5	6411381	6411382	1
Deletion	Chr4	6467385	6467396	11
Deletion	Chr8	6527321	6527331	10
Deletion	Chr10	6817709	6817721	12
Deletion	Chr10	6854207	6854208	1
Deletion	Chr3	7680987	7680996	9
Deletion	Chr4	7722161	7722162	1
Deletion	Chr11	7952743	7952744	1
Deletion	Chr9	7988496	7988509	13	LOC_Os09g13670
Deletion	Chr6	8204721	8204723	2
Deletion	Chr12	8513043	8513048	5
Deletion	Chr7	8637741	8637783	42
Deletion	Chr6	8967845	8967847	2
Deletion	Chr3	9174753	9174769	16
Deletion	Chr2	9199648	9199649	1
Deletion	Chr7	9873810	9873825	15	LOC_Os07g16810
Deletion	Chr4	10465807	10465808	1
Deletion	Chr11	10500273	10500275	2
Deletion	Chr12	10546060	10546061	1
Deletion	Chr3	11063773	11063795	22
Deletion	Chr11	11501358	11501359	1
Deletion	Chr5	11604821	11604822	1
Deletion	Chr8	13038773	13038775	2
Deletion	Chr6	13050403	13050409	6
Deletion	Chr3	13391047	13391099	52
Deletion	Chr7	13579942	13580013	71
Deletion	Chr12	13726489	13726490	1
Deletion	Chr3	13755468	13755469	1
Deletion	Chr7	14059437	14059442	5
Deletion	Chr8	14469656	14469657	1
Deletion	Chr1	15237821	15237840	19
Deletion	Chr10	15710663	15710680	17
Deletion	Chr5	15863291	15863293	2
Deletion	Chr9	16244532	16244533	1
Deletion	Chr1	16618909	16618911	2
Deletion	Chr9	17057864	17057865	1
Deletion	Chr7	17475892	17475894	2
Deletion	Chr3	18986302	18986304	2
Deletion	Chr10	20215934	20215973	39
Deletion	Chr1	21619168	21619169	1
Deletion	Chr1	22329000	22329001	1
Deletion	Chr11	22528252	22528253	1
Deletion	Chr2	23462995	23462996	1
Deletion	Chr4	26785778	26785779	1
Deletion	Chr7	26828531	26828532	1
Deletion	Chr5	27816315	27816316	1
Deletion	Chr6	28528186	28528188	2
Deletion	Chr6	28929352	28929354	2
Deletion	Chr6	30594838	30594844	6
Deletion	Chr4	31870252	31870253	1
Deletion	Chr2	32674196	32674197	1
Deletion	Chr1	38937310	38937311	1
Deletion	Chr1	42889149	42889163	14

Insertions: 58

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1259655	1259655	1
Insertion	Chr1	19936519	19936519	1
Insertion	Chr1	20617491	20617495	5
Insertion	Chr1	21214587	21214591	5	LOC_Os01g37890
Insertion	Chr1	28218601	28218607	7	LOC_Os01g49090
Insertion	Chr1	32050075	32050076	2	LOC_Os01g55620
Insertion	Chr1	41324818	41324819	2
Insertion	Chr10	1336288	1336289	2
Insertion	Chr10	4013843	4013843	1	LOC_Os10g07530
Insertion	Chr10	5091446	5091446	1	LOC_Os10g09440
Insertion	Chr11	13479934	13480017	84	LOC_Os11g23810
Insertion	Chr11	18895317	18895317	1
Insertion	Chr11	23966292	23966292	1
Insertion	Chr11	3249825	3249826	2
Insertion	Chr11	9979902	9979902	1
Insertion	Chr12	12301752	12301752	1
Insertion	Chr12	19535560	19535560	1
Insertion	Chr12	23804296	23804356	61
Insertion	Chr12	25194334	25194374	41
Insertion	Chr2	10193142	10193142	1
Insertion	Chr2	18678147	18678154	8
Insertion	Chr2	34491774	34491796	23
Insertion	Chr3	14691857	14691868	12	LOC_Os03g25660
Insertion	Chr4	11225828	11225828	1
Insertion	Chr4	23454806	23454809	4	LOC_Os04g39400
Insertion	Chr4	2574972	2574972	1
Insertion	Chr4	26501103	26501104	2
Insertion	Chr4	2989619	2989619	1
Insertion	Chr4	35483967	35483969	3
Insertion	Chr5	1026491	1026491	1
Insertion	Chr5	11225667	11225673	7
Insertion	Chr5	11345004	11345005	2
Insertion	Chr5	13954899	13954901	3	LOC_Os05g24170
Insertion	Chr5	7612172	7612172	1
Insertion	Chr6	10571668	10571669	2
Insertion	Chr6	17372718	17372718	1
Insertion	Chr6	18870148	18870148	1	LOC_Os06g32450
Insertion	Chr6	22905916	22905917	2
Insertion	Chr6	24551280	24551281	2
Insertion	Chr6	27168408	27168409	2
Insertion	Chr7	17430498	17430502	5
Insertion	Chr7	19024353	19024353	1
Insertion	Chr7	27634636	27634726	91
Insertion	Chr7	2766774	2766775	2
Insertion	Chr7	9513202	9513202	1
Insertion	Chr8	11741992	11741992	1
Insertion	Chr8	1362707	1362708	2
Insertion	Chr8	16564742	16564742	1
Insertion	Chr8	17952539	17952544	6
Insertion	Chr8	18901597	18901597	1
Insertion	Chr8	23461108	23461140	33	LOC_Os08g37120
Insertion	Chr9	15262128	15262132	5
Insertion	Chr9	15717592	15717593	2
Insertion	Chr9	16373313	16373315	3
Insertion	Chr9	2441356	2441356	1
Insertion	Chr9	5579140	5579184	45	LOC_Os09g10240
Insertion	Chr9	7057480	7057480	1
Insertion	Chr9	8027636	8027638	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12136784	12341686	LOC_Os06g21010
Inversion	Chr6	12136785	12341690	LOC_Os06g21010
Inversion	Chr5	22932688	23828680	LOC_Os05g39110
Inversion	Chr5	22932704	23828691	LOC_Os05g39110

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr10	7058293	Chr7	10666269
Translocation	Chr11	8879578	Chr5	4928621
Translocation	Chr12	13048898	Chr11	9292414
Translocation	Chr12	18642349	Chr10	17911445
Translocation	Chr5	19193599	Chr4	11717468
Translocation	Chr12	20149123	Chr9	22864450
Translocation	Chr11	23368397	Chr5	13251372
Translocation	Chr4	25271416	Chr2	27312756
Translocation	Chr12	27005786	Chr2	10461208

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