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Mutant Information |
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Mutant Name | FN2899-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2899-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15310997 | G-C | HOMO | INTRON | |
SBS | Chr1 | 21058833 | A-T | HOMO | INTERGENIC | |
SBS | Chr1 | 39031941 | A-T | HOMO | INTRON | |
SBS | Chr11 | 4615980 | C-G | HOMO | INTRON | |
SBS | Chr12 | 12326758 | A-G | HET | INTRON | |
SBS | Chr12 | 12601803 | G-A | HET | INTRON | |
SBS | Chr12 | 18796416 | A-T | HOMO | INTERGENIC | |
SBS | Chr12 | 19801648 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 22828093 | C-A | HOMO | INTERGENIC | |
SBS | Chr2 | 25835136 | G-T | HET | INTERGENIC | |
SBS | Chr3 | 15350486 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g26880 |
SBS | Chr3 | 19812067 | G-C | HET | INTERGENIC | |
SBS | Chr3 | 21805777 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 24678076 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 11585015 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 4715142 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 4823873 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 5623350 | C-T | HET | INTRON | |
SBS | Chr4 | 6896663 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 6896665 | G-T | HET | INTERGENIC | |
SBS | Chr5 | 1654472 | A-G | HET | INTERGENIC | |
SBS | Chr5 | 16793890 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 20300055 | C-A | HOMO | INTERGENIC | |
SBS | Chr6 | 21615962 | G-C | HOMO | INTRON | |
SBS | Chr9 | 20696847 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 4235267 | C-A | HOMO | INTERGENIC | |
SBS | Chr9 | 8741514 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14720 |
Deletions: 29
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 132738 | 132739 | 1 | |
Deletion | Chr8 | 1058949 | 1058956 | 7 | LOC_Os08g02560 |
Deletion | Chr5 | 1609754 | 1609757 | 3 | |
Deletion | Chr4 | 2592074 | 2592075 | 1 | |
Deletion | Chr8 | 2626546 | 2626548 | 2 | |
Deletion | Chr6 | 5300263 | 5300269 | 6 | LOC_Os06g10310 |
Deletion | Chr4 | 5888871 | 5888883 | 12 | LOC_Os04g10850 |
Deletion | Chr9 | 10709994 | 10709995 | 1 | LOC_Os09g17510 |
Deletion | Chr2 | 10756465 | 10756549 | 84 | |
Deletion | Chr11 | 11227770 | 11227776 | 6 | |
Deletion | Chr11 | 11380109 | 11380110 | 1 | |
Deletion | Chr8 | 12636136 | 12636140 | 4 | |
Deletion | Chr7 | 12661449 | 12661451 | 2 | LOC_Os07g22504 |
Deletion | Chr12 | 13147524 | 13147525 | 1 | |
Deletion | Chr3 | 13468456 | 13468460 | 4 | |
Deletion | Chr9 | 13750392 | 13750393 | 1 | |
Deletion | Chr9 | 13959340 | 13959341 | 1 | |
Deletion | Chr2 | 15073924 | 15073925 | 1 | |
Deletion | Chr8 | 16194393 | 16194464 | 71 | |
Deletion | Chr2 | 18758570 | 18758571 | 1 | |
Deletion | Chr7 | 18936645 | 18936711 | 66 | |
Deletion | Chr10 | 19243724 | 19243725 | 1 | |
Deletion | Chr5 | 20356457 | 20356458 | 1 | |
Deletion | Chr11 | 21327646 | 21327728 | 82 | |
Deletion | Chr12 | 21547001 | 21553000 | 5999 | LOC_Os12g35720 |
Deletion | Chr12 | 24970605 | 24970606 | 1 | |
Deletion | Chr11 | 28679770 | 28679817 | 47 | |
Deletion | Chr3 | 30175404 | 30175405 | 1 | |
Deletion | Chr3 | 30229513 | 30229527 | 14 |
Insertions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 1314466 | 1314481 | 16 | |
Insertion | Chr1 | 17298231 | 17298231 | 1 | |
Insertion | Chr1 | 26679328 | 26679328 | 1 | |
Insertion | Chr1 | 32952714 | 32952714 | 1 | |
Insertion | Chr10 | 10883329 | 10883329 | 1 | |
Insertion | Chr10 | 2413760 | 2413760 | 1 | |
Insertion | Chr10 | 6469197 | 6469199 | 3 | |
Insertion | Chr11 | 7437197 | 7437296 | 100 | |
Insertion | Chr3 | 13558949 | 13559017 | 69 | |
Insertion | Chr3 | 34137346 | 34137364 | 19 | LOC_Os03g60020![]() |
Insertion | Chr3 | 3787262 | 3787262 | 1 | |
Insertion | Chr4 | 2561978 | 2562066 | 89 | |
Insertion | Chr4 | 2644025 | 2644025 | 1 | |
Insertion | Chr6 | 11827213 | 11827213 | 1 | |
Insertion | Chr6 | 24064990 | 24065004 | 15 | |
Insertion | Chr6 | 28607046 | 28607081 | 36 | |
Insertion | Chr7 | 9871334 | 9871357 | 24 | |
Insertion | Chr9 | 8138894 | 8138895 | 2 |
No Inversion
No Translocation