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Mutant Information

Mutant NameFN2899-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2899-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 27
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115310997G-CHOMOINTRON
SBSChr121058833A-THOMOINTERGENIC
SBSChr139031941A-THOMOINTRON
SBSChr114615980C-GHOMOINTRON
SBSChr1212326758A-GHETINTRON
SBSChr1212601803G-AHETINTRON
SBSChr1218796416A-THOMOINTERGENIC
SBSChr1219801648C-THETINTERGENIC
SBSChr1222828093C-AHOMOINTERGENIC
SBSChr225835136G-THETINTERGENIC
SBSChr315350486C-THETNON_SYNONYMOUS_CODINGLOC_Os03g26880
SBSChr319812067G-CHETINTERGENIC
SBSChr321805777G-AHETINTERGENIC
SBSChr324678076G-AHETINTERGENIC
SBSChr411585015G-AHETINTERGENIC
SBSChr44715142T-AHETINTERGENIC
SBSChr44823873T-CHETINTERGENIC
SBSChr45623350C-THETINTRON
SBSChr46896663T-CHETINTERGENIC
SBSChr46896665G-THETINTERGENIC
SBSChr51654472A-GHETINTERGENIC
SBSChr516793890G-THETINTERGENIC
SBSChr620300055C-AHOMOINTERGENIC
SBSChr621615962G-CHOMOINTRON
SBSChr920696847G-AHETINTERGENIC
SBSChr94235267C-AHOMOINTERGENIC
SBSChr98741514G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g14720

Deletions: 29
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr91327381327391
DeletionChr8105894910589567LOC_Os08g02560
DeletionChr5160975416097573
DeletionChr4259207425920751
DeletionChr8262654626265482
DeletionChr6530026353002696LOC_Os06g10310
DeletionChr45888871588888312LOC_Os04g10850
DeletionChr910709994107099951LOC_Os09g17510
DeletionChr2107564651075654984
DeletionChr1111227770112277766
DeletionChr1111380109113801101
DeletionChr812636136126361404
DeletionChr712661449126614512LOC_Os07g22504
DeletionChr1213147524131475251
DeletionChr313468456134684604
DeletionChr913750392137503931
DeletionChr913959340139593411
DeletionChr215073924150739251
DeletionChr8161943931619446471
DeletionChr218758570187585711
DeletionChr7189366451893671166
DeletionChr1019243724192437251
DeletionChr520356457203564581
DeletionChr11213276462132772882
DeletionChr1221547001215530005999LOC_Os12g35720
DeletionChr1224970605249706061
DeletionChr11286797702867981747
DeletionChr330175404301754051
DeletionChr3302295133022952714

Insertions: 18
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11314466131448116
InsertionChr117298231172982311
InsertionChr126679328266793281
InsertionChr132952714329527141
InsertionChr1010883329108833291
InsertionChr10241376024137601
InsertionChr10646919764691993
InsertionChr1174371977437296100
InsertionChr3135589491355901769
InsertionChr3341373463413736419LOC_Os03g60020image
InsertionChr3378726237872621
InsertionChr42561978256206689
InsertionChr4264402526440251
InsertionChr611827213118272131
InsertionChr6240649902406500415
InsertionChr6286070462860708136
InsertionChr79871334987135724
InsertionChr9813889481388952

No Inversion

No Translocation