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Mutant Information

Mutant Name	FN2902-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2902-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21543083	C-T	HET	INTRON
SBS	Chr1	23695338	G-A	HET	INTERGENIC
SBS	Chr10	14479441	A-G	HET	INTERGENIC
SBS	Chr11	18792853	G-T	HET	INTERGENIC
SBS	Chr12	12067448	G-A	HOMO	INTRON
SBS	Chr12	22739223	G-T	HOMO	INTERGENIC
SBS	Chr12	22739225	C-T	HOMO	INTERGENIC
SBS	Chr12	4557179	T-A	HET	INTRON
SBS	Chr2	23078674	T-A	HET	INTERGENIC
SBS	Chr3	19549550	A-G	HET	INTERGENIC
SBS	Chr3	30110474	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52470
SBS	Chr3	30110475	G-T	HET	SYNONYMOUS_CODING
SBS	Chr3	30281551	G-C	HOMO	INTERGENIC
SBS	Chr3	33127137	C-A	HET	INTERGENIC
SBS	Chr3	36225829	T-A	HET	INTERGENIC
SBS	Chr4	17344299	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29250
SBS	Chr5	14478556	G-T	HET	STOP_GAINED	LOC_Os05g25010
SBS	Chr5	6519464	T-A	HOMO	INTERGENIC
SBS	Chr6	11908137	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g20660
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	19445634	C-T	HOMO	UTR_3_PRIME
SBS	Chr7	12494672	T-C	HET	INTERGENIC
SBS	Chr7	12732026	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g22620
SBS	Chr7	14390833	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25190
SBS	Chr7	16711509	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28550
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr8	4042424	C-T	HET	INTERGENIC
SBS	Chr8	8996897	T-C	HOMO	INTERGENIC
SBS	Chr9	5973642	C-T	HOMO	STOP_GAINED	LOC_Os09g10890

Deletions: 82

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	244412	244413	1
Deletion	Chr6	329655	329660	5
Deletion	Chr6	525797	525798	1
Deletion	Chr9	794636	794637	1
Deletion	Chr4	834836	834928	92
Deletion	Chr9	1026763	1026766	3
Deletion	Chr6	1231573	1231592	19
Deletion	Chr4	1512165	1512166	1	LOC_Os04g03490
Deletion	Chr4	2316186	2316187	1
Deletion	Chr8	2324939	2324945	6
Deletion	Chr8	2449093	2449094	1
Deletion	Chr4	2627645	2627646	1
Deletion	Chr8	2746184	2746273	89	LOC_Os08g05260
Deletion	Chr11	4227619	4227620	1
Deletion	Chr10	4423551	4423554	3
Deletion	Chr7	4439106	4439107	1
Deletion	Chr9	4500361	4500384	23
Deletion	Chr4	5406611	5406612	1
Deletion	Chr10	6411944	6411945	1
Deletion	Chr8	6662346	6662347	1	LOC_Os08g11330
Deletion	Chr4	7115323	7115324	1
Deletion	Chr2	7206117	7206118	1
Deletion	Chr3	7410373	7410374	1
Deletion	Chr4	7717417	7717418	1
Deletion	Chr4	7992020	7992021	1	LOC_Os04g14260
Deletion	Chr2	8032211	8032263	52
Deletion	Chr10	8386097	8386099	2
Deletion	Chr9	8445795	8445796	1
Deletion	Chr10	8447448	8447449	1
Deletion	Chr8	8544846	8544854	8	LOC_Os08g14250
Deletion	Chr10	9479013	9479014	1
Deletion	Chr9	9855614	9855633	19
Deletion	Chr8	10015146	10015147	1
Deletion	Chr10	10458355	10458356	1
Deletion	Chr8	11087948	11087949	1
Deletion	Chr4	11483185	11483187	2
Deletion	Chr6	12193521	12193523	2
Deletion	Chr2	12236928	12236992	64
Deletion	Chr10	12291178	12291179	1	LOC_Os10g23990
Deletion	Chr1	12390980	12390981	1
Deletion	Chr8	12473139	12473141	2
Deletion	Chr10	12648560	12648563	3
Deletion	Chr2	12991458	12991485	27
Deletion	Chr10	13200849	13200850	1
Deletion	Chr5	13213863	13213864	1
Deletion	Chr2	13341749	13341750	1
Deletion	Chr2	13341930	13341931	1
Deletion	Chr8	13668153	13668156	3
Deletion	Chr10	13789001	13811000	21999	2
Deletion	Chr4	13979152	13979155	3
Deletion	Chr8	15947151	15947152	1
Deletion	Chr11	16553159	16553160	1
Deletion	Chr4	16981874	16981877	3
Deletion	Chr10	16997101	16997161	60
Deletion	Chr4	17143631	17143654	23
Deletion	Chr6	17158311	17158399	88
Deletion	Chr9	17672213	17672214	1
Deletion	Chr9	18082167	18082257	90
Deletion	Chr3	18918810	18918811	1
Deletion	Chr5	19555300	19555303	3	LOC_Os05g33340
Deletion	Chr7	19813789	19813791	2
Deletion	Chr5	19836715	19836716	1
Deletion	Chr5	19861395	19861396	1
Deletion	Chr11	20225999	20226004	5
Deletion	Chr12	20493706	20493707	1
Deletion	Chr8	20956960	20956961	1
Deletion	Chr8	21061846	21061847	1
Deletion	Chr5	21179289	21179297	8
Deletion	Chr9	22197421	22197422	1
Deletion	Chr1	23494088	23494093	5
Deletion	Chr1	24733731	24733732	1
Deletion	Chr12	25133813	25133814	1
Deletion	Chr12	25599961	25599963	2	LOC_Os12g41280
Deletion	Chr5	26434154	26434155	1
Deletion	Chr4	27580467	27580468	1
Deletion	Chr4	28684180	28684189	9
Deletion	Chr6	29567003	29567004	1
Deletion	Chr2	32641001	32711000	69999	16
Deletion	Chr2	32716001	32969000	252999	34
Deletion	Chr2	32976001	33119000	142999	22
Deletion	Chr4	33370205	33370212	7
Deletion	Chr2	33662187	33662188	1

Insertions: 69

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	17637586	17637586	1
Insertion	Chr1	25629348	25629348	1
Insertion	Chr1	32388773	32388773	1
Insertion	Chr1	41423418	41423418	1
Insertion	Chr1	43246283	43246284	2
Insertion	Chr10	2076631	2076632	2
Insertion	Chr10	21384598	21384598	1
Insertion	Chr10	21612212	21612214	3
Insertion	Chr10	23138405	23138405	1
Insertion	Chr10	3699208	3699209	2
Insertion	Chr10	8653054	8653054	1
Insertion	Chr11	14925452	14925453	2
Insertion	Chr11	15043728	15043728	1
Insertion	Chr11	18136649	18136671	23
Insertion	Chr11	18714501	18714502	2
Insertion	Chr11	19563651	19563676	26
Insertion	Chr11	2085951	2085954	4
Insertion	Chr11	25450136	25450137	2
Insertion	Chr11	26865288	26865315	28
Insertion	Chr11	9987199	9987199	1
Insertion	Chr12	11489259	11489261	3
Insertion	Chr12	23373229	23373229	1
Insertion	Chr12	25685837	25685943	107
Insertion	Chr2	1521925	1521925	1
Insertion	Chr2	18666674	18666674	1
Insertion	Chr2	19439665	19439767	103
Insertion	Chr2	3809114	3809115	2
Insertion	Chr2	9395428	9395428	1
Insertion	Chr3	13466608	13466608	1
Insertion	Chr3	13484711	13484711	1
Insertion	Chr3	14954821	14954827	7
Insertion	Chr3	19640672	19640672	1
Insertion	Chr3	20930992	20931016	25
Insertion	Chr3	23942107	23942107	1
Insertion	Chr3	7300759	7300759	1
Insertion	Chr3	7417100	7417100	1
Insertion	Chr4	12476892	12476910	19
Insertion	Chr4	1517315	1517319	5
Insertion	Chr4	28358614	28358614	1
Insertion	Chr4	2928416	2928416	1
Insertion	Chr4	3502556	3502556	1
Insertion	Chr4	4254661	4254664	4
Insertion	Chr4	481220	481222	3
Insertion	Chr5	11965623	11965623	1
Insertion	Chr5	12061939	12061939	1
Insertion	Chr5	12760956	12760956	1
Insertion	Chr5	8762333	8762334	2
Insertion	Chr6	12159374	12159374	1
Insertion	Chr6	19660571	19660572	2
Insertion	Chr6	24709465	24709469	5
Insertion	Chr6	7292704	7292704	1
Insertion	Chr6	9640716	9640835	120
Insertion	Chr7	16836657	16836657	1	LOC_Os07g28760
Insertion	Chr7	17480813	17480818	6	LOC_Os07g29740
Insertion	Chr7	19872782	19872782	1
Insertion	Chr7	22131306	22131306	1
Insertion	Chr7	23017399	23017399	1
Insertion	Chr7	26760074	26760075	2
Insertion	Chr7	2700685	2700685	1
Insertion	Chr7	27598814	27598814	1	LOC_Os07g46250
Insertion	Chr7	7701016	7701019	4
Insertion	Chr8	1839331	1839335	5
Insertion	Chr8	20422635	20422682	48
Insertion	Chr8	6978157	6978157	1
Insertion	Chr8	6990611	6990611	1	LOC_Os08g11920
Insertion	Chr8	7241051	7241051	1
Insertion	Chr8	7447104	7447104	1
Insertion	Chr9	21444889	21444889	1
Insertion	Chr9	4108787	4108787	1

No Inversion

No Translocation

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