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Mutant Information

Mutant Name	FN2913-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2913-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14277472	T-C	HET	INTERGENIC
SBS	Chr1	219753	C-T	HOMO	INTRON
SBS	Chr1	22015162	G-A	HET	INTERGENIC
SBS	Chr1	32290610	C-T	HET	INTERGENIC
SBS	Chr1	33601470	G-A	HET	STOP_GAINED	LOC_Os01g58100
SBS	Chr1	34205579	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g59210
SBS	Chr1	6822084	A-G	HET	INTERGENIC
SBS	Chr1	7007100	G-A	HOMO	INTERGENIC
SBS	Chr10	11752806	T-A	HET	INTERGENIC
SBS	Chr10	11752807	T-A	HET	INTERGENIC
SBS	Chr10	16347395	G-T	HOMO	INTERGENIC
SBS	Chr10	17579261	C-T	HET	INTERGENIC
SBS	Chr10	7353402	A-G	HET	INTERGENIC
SBS	Chr11	1004490	T-C	HET	INTERGENIC
SBS	Chr11	15092457	C-A	HET	INTERGENIC
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr11	15567450	G-T	HET	INTERGENIC
SBS	Chr11	1606690	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03970
SBS	Chr11	20656101	C-T	HET	INTERGENIC
SBS	Chr11	3734783	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g07420
SBS	Chr11	3734784	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g07420
SBS	Chr12	10938097	T-G	HET	INTRON
SBS	Chr12	14447736	C-G	HET	INTERGENIC
SBS	Chr12	14450341	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25170
SBS	Chr12	155921	A-T	HOMO	INTERGENIC
SBS	Chr12	1926211	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g04520
SBS	Chr12	9416087	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	9425659	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16460
SBS	Chr2	20212545	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	22953963	G-A	HOMO	INTERGENIC
SBS	Chr2	34282824	T-A	HOMO	INTERGENIC
SBS	Chr4	10393348	G-A	HOMO	INTRON
SBS	Chr4	17557108	A-C	HOMO	INTERGENIC
SBS	Chr4	18372686	A-T	HET	INTRON
SBS	Chr4	2179566	C-T	HOMO	INTRON
SBS	Chr5	19103284	G-A	HET	INTERGENIC
SBS	Chr5	20678763	C-A	HET	INTRON
SBS	Chr5	20678764	A-T	HET	INTRON
SBS	Chr5	20678765	C-T	HET	INTRON
SBS	Chr6	1651043	G-A	HET	UTR_3_PRIME
SBS	Chr7	26386160	G-A	HET	INTERGENIC
SBS	Chr7	27904643	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46690
SBS	Chr8	1351271	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g03030
SBS	Chr8	1442317	G-A	HET	INTERGENIC
SBS	Chr8	2734550	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g05250
SBS	Chr8	3683591	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	6745293	C-T	HET	INTERGENIC
SBS	Chr9	4621560	A-G	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	426974	426976	2	LOC_Os05g01700
Deletion	Chr5	682769	682770	1
Deletion	Chr10	1095243	1095244	1
Deletion	Chr9	4887795	4887796	1
Deletion	Chr9	7150936	7150938	2
Deletion	Chr1	8618260	8618282	22
Deletion	Chr6	15208263	15208264	1	LOC_Os06g25970
Deletion	Chr6	17764103	17764104	1
Deletion	Chr2	18897277	18897285	8
Deletion	Chr6	19619211	19619213	2
Deletion	Chr2	19712998	19713003	5
Deletion	Chr9	20832425	20832426	1
Deletion	Chr2	23289001	23316000	26999	6
Deletion	Chr12	24400479	24400482	3	LOC_Os12g39560
Deletion	Chr2	25039943	25039948	5	LOC_Os02g41702
Deletion	Chr12	26542586	26542591	5
Deletion	Chr7	27902147	27902148	1
Deletion	Chr2	30406424	30406426	2
Deletion	Chr3	33776417	33776419	2
Deletion	Chr3	34804556	34804559	3

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20060118	20060119	2
Insertion	Chr1	29264799	29264800	2
Insertion	Chr1	41747170	41747191	22
Insertion	Chr10	10472225	10472225	1
Insertion	Chr11	14420728	14420728	1
Insertion	Chr11	15036222	15036223	2
Insertion	Chr12	15794855	15794855	1
Insertion	Chr2	23044476	23044477	2
Insertion	Chr2	27287986	27287986	1
Insertion	Chr4	835071	835160	90
Insertion	Chr5	12517995	12517995	1
Insertion	Chr5	5204404	5204404	1	LOC_Os05g09320
Insertion	Chr6	20328262	20328262	1
Insertion	Chr6	27362408	27362408	1
Insertion	Chr7	20320250	20320251	2
Insertion	Chr9	13061771	13061772	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	19187006	19187696

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	15936908	Chr2	15426389

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