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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18464457	A-G	HOMO	INTRON
SBS	Chr1	22563805	G-A	HOMO	INTERGENIC
SBS	Chr10	12646516	T-C	HET	INTRON
SBS	Chr10	19218738	C-T	HET	UTR_5_PRIME
SBS	Chr11	12616298	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	14306669	T-A	HET	INTERGENIC
SBS	Chr11	26112826	T-C	HET	INTERGENIC
SBS	Chr11	8554777	A-C	HOMO	INTERGENIC
SBS	Chr12	16652317	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g28200
SBS	Chr12	21092116	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	12245173	A-G	HET	INTERGENIC
SBS	Chr2	33462904	G-T	HOMO	INTERGENIC
SBS	Chr2	8102631	G-A	HET	INTERGENIC
SBS	Chr3	13151006	C-T	HOMO	INTERGENIC
SBS	Chr3	13559330	C-T	HOMO	INTERGENIC
SBS	Chr3	18488332	G-C	HET	UTR_5_PRIME
SBS	Chr3	18488333	G-A	HET	UTR_5_PRIME
SBS	Chr3	22172838	T-G	HET	UTR_5_PRIME
SBS	Chr3	34367057	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	34467223	C-T	HET	INTERGENIC
SBS	Chr4	10578278	G-T	HOMO	INTERGENIC
SBS	Chr4	16853862	G-A	HET	INTRON
SBS	Chr4	21054826	A-T	HET	INTERGENIC
SBS	Chr4	28831824	A-G	HET	INTERGENIC
SBS	Chr4	3002231	G-C	HOMO	INTRON
SBS	Chr4	8934072	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	11748111	G-A	HET	INTRON
SBS	Chr6	17425811	T-G	HET	INTRON
SBS	Chr7	11178152	G-A	HET	INTRON
SBS	Chr7	8541666	C-G	HET	INTRON
SBS	Chr8	17564703	G-A	HET	INTERGENIC
SBS	Chr8	20468309	G-T	HET	INTERGENIC
SBS	Chr9	22635926	C-T	HOMO	START_GAINED

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	234516	234576	60	LOC_Os09g01270
Deletion	Chr10	528885	528892	7
Deletion	Chr7	1463122	1463123	1	LOC_Os07g03630
Deletion	Chr2	1617243	1617245	2
Deletion	Chr1	2238991	2238999	8
Deletion	Chr5	2949906	2949907	1
Deletion	Chr4	3636525	3636526	1	LOC_Os04g06900
Deletion	Chr11	4886885	4886886	1
Deletion	Chr8	6084507	6084508	1
Deletion	Chr2	7522138	7522140	2
Deletion	Chr6	7638013	7638018	5
Deletion	Chr7	7819269	7819270	1
Deletion	Chr9	8926244	8926245	1
Deletion	Chr3	9118757	9118759	2
Deletion	Chr9	9165435	9165525	90
Deletion	Chr1	12715900	12715901	1
Deletion	Chr3	13150959	13150962	3
Deletion	Chr3	14313676	14313680	4
Deletion	Chr1	14365158	14365160	2
Deletion	Chr5	15547178	15547179	1
Deletion	Chr8	16603860	16603862	2
Deletion	Chr11	17706272	17706275	3
Deletion	Chr4	18303803	18303804	1
Deletion	Chr2	19212627	19212634	7	LOC_Os02g32480
Deletion	Chr9	19861713	19861714	1
Deletion	Chr3	20142339	20142340	1
Deletion	Chr8	20613841	20613933	92
Deletion	Chr5	21687528	21687533	5	LOC_Os05g37100
Deletion	Chr7	24191205	24191206	1
Deletion	Chr8	25593042	25593043	1
Deletion	Chr5	29411022	29411023	1
Deletion	Chr1	32014869	32014874	5	LOC_Os01g55570
Deletion	Chr4	34057180	34057185	5
Deletion	Chr4	34077584	34077589	5

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19749098	19749098	1
Insertion	Chr1	35339401	35339428	28
Insertion	Chr1	43081133	43081133	1
Insertion	Chr10	14007456	14007456	1
Insertion	Chr10	1675732	1675768	37
Insertion	Chr11	15071087	15071087	1
Insertion	Chr12	11710810	11710810	1
Insertion	Chr12	3831401	3831402	2
Insertion	Chr2	16471286	16471357	72
Insertion	Chr2	18465160	18465165	6
Insertion	Chr5	10007414	10007414	1
Insertion	Chr6	18053328	18053328	1
Insertion	Chr7	28604370	28604370	1
Insertion	Chr8	13644392	13644437	46
Insertion	Chr8	18582591	18582665	75
Insertion	Chr8	24362510	24362510	1
Insertion	Chr9	15545377	15545378	2
Insertion	Chr9	17258247	17258247	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19800569	20588789
Inversion	Chr6	19800575	20588797

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1706564	Chr2	35082576
Translocation	Chr11	12909654	Chr9	3993747
Translocation	Chr8	13239555	Chr4	3609435	LOC_Os04g06850
Translocation	Chr8	16049363	Chr4	13175658
Translocation	Chr11	24994393	Chr4	17873076

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