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| Mutant Information |
|---|
| Mutant Name | FN2915-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2915-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13467976 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 14555024 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 2003162 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 4818864 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr10 | 43573 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 11179822 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 13001538 | A-T | HOMO | INTRON | |
| SBS | Chr11 | 20594242 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 24976377 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g41620 |
| SBS | Chr12 | 11126523 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 22812228 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 29411754 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 32791408 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 4003538 | G-A | HET | INTRON | |
| SBS | Chr3 | 9690927 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 20891404 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g35180 |
| SBS | Chr6 | 24649863 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 18226425 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 2189604 | T-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 23953558 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g39930 |
| SBS | Chr7 | 8557417 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 21374070 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g34090 |
Deletions: 34
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 3005806 | 3005807 | 1 | |
| Deletion | Chr5 | 5669206 | 5669221 | 15 | |
| Deletion | Chr11 | 9364480 | 9364481 | 1 | |
| Deletion | Chr12 | 9727108 | 9727137 | 29 | LOC_Os12g16990 |
| Deletion | Chr7 | 9870758 | 9870759 | 1 | |
| Deletion | Chr2 | 10331673 | 10331685 | 12 | |
| Deletion | Chr4 | 11843784 | 11843785 | 1 | |
| Deletion | Chr7 | 13226920 | 13226929 | 9 | LOC_Os07g23440 |
| Deletion | Chr12 | 13615286 | 13615296 | 10 | |
| Deletion | Chr6 | 13938453 | 13938455 | 2 | |
| Deletion | Chr9 | 14170591 | 14170594 | 3 | |
| Deletion | Chr4 | 14419155 | 14419156 | 1 | |
| Deletion | Chr10 | 15778319 | 15778325 | 6 | |
| Deletion | Chr2 | 17255058 | 17255080 | 22 | |
| Deletion | Chr12 | 17891911 | 17891917 | 6 | |
| Deletion | Chr9 | 17916173 | 17916178 | 5 | |
| Deletion | Chr4 | 19357629 | 19357630 | 1 | |
| Deletion | Chr6 | 19388027 | 19388040 | 13 | LOC_Os06g33300 |
| Deletion | Chr2 | 20180581 | 20180583 | 2 | LOC_Os02g33850 |
| Deletion | Chr11 | 20236026 | 20236027 | 1 | |
| Deletion | Chr2 | 21359229 | 21359230 | 1 | |
| Deletion | Chr3 | 21437628 | 21437634 | 6 | |
| Deletion | Chr6 | 21475103 | 21475104 | 1 | |
| Deletion | Chr2 | 21634346 | 21634347 | 1 | |
| Deletion | Chr2 | 21727130 | 21727174 | 44 | LOC_Os02g36100 |
| Deletion | Chr10 | 22184576 | 22184577 | 1 | |
| Deletion | Chr8 | 22509008 | 22509009 | 1 | |
| Deletion | Chr10 | 22711146 | 22711148 | 2 | |
| Deletion | Chr2 | 23351742 | 23351744 | 2 | |
| Deletion | Chr11 | 26018496 | 26018497 | 1 | |
| Deletion | Chr3 | 26412057 | 26412065 | 8 | |
| Deletion | Chr2 | 27584406 | 27584407 | 1 | |
| Deletion | Chr3 | 31101484 | 31101498 | 14 | |
| Deletion | Chr3 | 33382850 | 33382853 | 3 |
Insertions: 30
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 12951080 | 12951080 | 1 | |
| Insertion | Chr1 | 18239425 | 18239466 | 42 | |
| Insertion | Chr1 | 19662054 | 19662054 | 1 | LOC_Os01g35540 |
| Insertion | Chr1 | 19750952 | 19750952 | 1 | |
| Insertion | Chr10 | 446549 | 446629 | 81 | |
| Insertion | Chr10 | 6813422 | 6813422 | 1 | 2 |
| Insertion | Chr10 | 6813422 | 6813424 | 3 | 2 |
| Insertion | Chr11 | 20630907 | 20630907 | 1 | |
| Insertion | Chr11 | 5607892 | 5607922 | 31 | |
| Insertion | Chr12 | 18715864 | 18715864 | 1 | |
| Insertion | Chr12 | 23989620 | 23989747 | 128 | |
| Insertion | Chr2 | 23317491 | 23317491 | 1 | |
| Insertion | Chr2 | 9406033 | 9406033 | 1 | |
| Insertion | Chr3 | 15721256 | 15721263 | 8 | |
| Insertion | Chr3 | 30434909 | 30434918 | 10 | |
| Insertion | Chr3 | 9057881 | 9057881 | 1 | |
| Insertion | Chr4 | 11151848 | 11151848 | 1 | |
| Insertion | Chr5 | 11580365 | 11580365 | 1 | |
| Insertion | Chr6 | 22901228 | 22901229 | 2 | |
| Insertion | Chr7 | 16490105 | 16490145 | 41 | |
| Insertion | Chr7 | 17078006 | 17078006 | 1 | |
| Insertion | Chr8 | 12640906 | 12640976 | 71 | |
| Insertion | Chr8 | 14851515 | 14851515 | 1 | |
| Insertion | Chr8 | 16645586 | 16645589 | 4 | |
| Insertion | Chr8 | 18976745 | 18976745 | 1 | |
| Insertion | Chr8 | 22787352 | 22787352 | 1 | |
| Insertion | Chr8 | 25231852 | 25231852 | 1 | |
| Insertion | Chr8 | 6514991 | 6514991 | 1 | |
| Insertion | Chr9 | 133423 | 133423 | 1 | |
| Insertion | Chr9 | 4844295 | 4844295 | 1 |
No Inversion
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1636411 | Chr2 | 30232419 | LOC_Os02g49470 |
| Translocation | Chr9 | 2202955 | Chr3 | 25665901 | |
| Translocation | Chr12 | 3766431 | Chr11 | 17795276 | |
| Translocation | Chr7 | 7585392 | Chr4 | 31353968 | |
| Translocation | Chr11 | 10321341 | Chr1 | 16146429 | |
| Translocation | Chr5 | 16961975 | Chr2 | 2674024 | |
| Translocation | Chr7 | 17261227 | Chr4 | 8718617 | |
| Translocation | Chr4 | 17940185 | Chr2 | 13401460 | LOC_Os04g30040 |
| Translocation | Chr9 | 19195951 | Chr8 | 3980328 | LOC_Os09g32169 |
| Translocation | Chr12 | 22729636 | Chr1 | 17724540 | |
| Translocation | Chr11 | 27701516 | Chr4 | 33337463 | LOC_Os11g45780 |