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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19047496	C-A	HOMO	INTERGENIC
SBS	Chr1	40886568	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g70630
SBS	Chr2	3220693	A-T	HOMO	INTRON
SBS	Chr2	3861856	G-T	HOMO	INTRON
SBS	Chr2	5464946	T-A	HET	INTERGENIC
SBS	Chr2	23855741	C-A	HOMO	INTERGENIC
SBS	Chr3	9321555	C-G	HET	INTERGENIC
SBS	Chr4	15983501	T-G	HET	INTERGENIC
SBS	Chr5	1796768	C-A	HET	UTR_3_PRIME
SBS	Chr5	15040106	T-C	HET	INTERGENIC
SBS	Chr5	17121425	G-C	HET	INTERGENIC
SBS	Chr5	19490627	G-A	HET	INTERGENIC
SBS	Chr5	20484444	C-G	HET	INTERGENIC
SBS	Chr5	21969112	G-A	HET	INTERGENIC
SBS	Chr6	7521340	G-A	HET	INTERGENIC
SBS	Chr6	20224268	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34790
SBS	Chr6	24603847	G-A	HOMO	INTRON
SBS	Chr7	10473753	C-T	HET	INTERGENIC
SBS	Chr8	9540762	G-A	HOMO	INTERGENIC
SBS	Chr8	21091205	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g33750
SBS	Chr9	5356330	G-T	HET	STOP_GAINED	LOC_Os09g09860
SBS	Chr9	6735634	G-C	HET	INTERGENIC
SBS	Chr10	6444457	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11672
SBS	Chr10	10247262	T-C	HET	INTERGENIC
SBS	Chr10	10247269	T-A	HET	INTERGENIC
SBS	Chr10	11499267	G-A	HET	INTERGENIC
SBS	Chr10	11499268	C-A	HET	INTERGENIC
SBS	Chr10	19418877	C-T	HOMO	INTERGENIC
SBS	Chr11	4800079	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g09020
SBS	Chr12	208039	A-C	HET	INTERGENIC
SBS	Chr12	4461199	T-A	HET	INTERGENIC
SBS	Chr12	15374673	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	15374675	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26330

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	313894	313895	1
Deletion	Chr2	355115	355116	1
Deletion	Chr6	1327499	1327500	1
Deletion	Chr3	2191898	2191899	1
Deletion	Chr5	2232935	2232940	5
Deletion	Chr8	2753749	2753838	89
Deletion	Chr9	3192104	3192120	16	LOC_Os09g06710
Deletion	Chr10	5082916	5082917	1
Deletion	Chr4	5434473	5434474	1
Deletion	Chr7	6398359	6398376	17
Deletion	Chr6	6873098	6873107	9
Deletion	Chr8	6938497	6938539	42
Deletion	Chr12	8132712	8132716	4
Deletion	Chr5	9017197	9017209	12	LOC_Os05g15970
Deletion	Chr8	10547302	10547303	1
Deletion	Chr10	11399163	11399173	10
Deletion	Chr3	11401979	11401980	1
Deletion	Chr6	12100724	12100726	2
Deletion	Chr5	12724764	12724765	1
Deletion	Chr12	12748236	12748262	26	LOC_Os12g22590
Deletion	Chr1	13685405	13685406	1
Deletion	Chr1	13873512	13873513	1	LOC_Os01g24630
Deletion	Chr10	14080903	14080905	2	LOC_Os10g26830
Deletion	Chr5	15316692	15316693	1
Deletion	Chr1	17191145	17191149	4
Deletion	Chr8	19173473	19173475	2
Deletion	Chr3	21257699	21257701	2
Deletion	Chr7	22220441	22220446	5
Deletion	Chr2	22590980	22590993	13
Deletion	Chr10	22897618	22897630	12	LOC_Os10g42470
Deletion	Chr5	25597096	25597097	1
Deletion	Chr2	28771736	28771737	1
Deletion	Chr1	29079122	29079123	1
Deletion	Chr1	36978345	36978346	1

Insertions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19747231	19747231	1
Insertion	Chr1	20160708	20160709	2
Insertion	Chr1	21773430	21773522	93
Insertion	Chr1	26965292	26965292	1	LOC_Os01g47170
Insertion	Chr2	19697533	19697533	1
Insertion	Chr2	23351769	23351769	1
Insertion	Chr2	35472849	35472849	1
Insertion	Chr3	8316941	8316941	1
Insertion	Chr3	15138760	15138777	18	LOC_Os03g26510
Insertion	Chr3	22522408	22522408	1
Insertion	Chr4	2620777	2620778	2
Insertion	Chr4	7412627	7412627	1
Insertion	Chr4	14333895	14333899	5	LOC_Os04g24880
Insertion	Chr4	16721013	16721013	1
Insertion	Chr5	9807789	9807789	1
Insertion	Chr5	10287749	10287749	1
Insertion	Chr5	12302079	12302136	58
Insertion	Chr5	24882841	24882865	25
Insertion	Chr6	4802	4802	1
Insertion	Chr6	13225365	13225368	4
Insertion	Chr6	26919526	26919526	1
Insertion	Chr7	3657554	3657556	3
Insertion	Chr7	7822357	7822357	1
Insertion	Chr7	11139930	11140004	75
Insertion	Chr7	15967538	15967538	1
Insertion	Chr7	17644250	17644336	87
Insertion	Chr8	3235409	3235418	10
Insertion	Chr8	22769881	22769882	2
Insertion	Chr11	588505	588505	1
Insertion	Chr12	8453895	8453896	2
Insertion	Chr12	8978787	8978799	13
Insertion	Chr12	10087160	10087173	14
Insertion	Chr12	19010696	19010699	4
Insertion	Chr12	24691399	24691399	1	LOC_Os12g39950
Insertion	Chr12	26036133	26036147	15

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11162728	11179913	LOC_Os11g19410

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4460857	Chr11	11162723	LOC_Os11g19410
Translocation	Chr12	4463037	Chr11	11179908	LOC_Os12g08730
Translocation	Chr10	5149235	Chr4	3713485
Translocation	Chr8	7089980	Chr4	2989030
Translocation	Chr12	7118372	Chr4	12181
Translocation	Chr5	8931354	Chr4	20321644
Translocation	Chr5	8931368	Chr4	20323792
Translocation	Chr8	9335065	Chr6	30966718
Translocation	Chr6	17022414	Chr2	8917810
Translocation	Chr8	25143134	Chr4	3640802
Translocation	Chr12	27001600	Chr2	10461264	LOC_Os12g43520
Translocation	Chr4	34006548	Chr1	9105820

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