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Mutant Information

Mutant Name	FN2918-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2918-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10477962	A-C	HET	INTRON
SBS	Chr1	36806067	C-T	HET	INTERGENIC
SBS	Chr10	14607430	C-A	HET	SPLICE_SITE_REGION
SBS	Chr11	11463634	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	1455798	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g03730
SBS	Chr11	1455800	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g03730
SBS	Chr11	1455801	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g03730
SBS	Chr11	6157077	T-A	HOMO	INTRON
SBS	Chr12	6952131	C-T	HET	INTERGENIC
SBS	Chr2	11721731	G-A	HOMO	INTRON
SBS	Chr2	24895685	G-A	HOMO	INTERGENIC
SBS	Chr2	26423663	A-T	HOMO	INTERGENIC
SBS	Chr3	24803014	C-G	HET	INTRON
SBS	Chr3	706085	A-G	HET	INTRON
SBS	Chr5	2792692	C-T	HET	INTERGENIC
SBS	Chr5	3530234	C-T	HET	UTR_3_PRIME
SBS	Chr5	6495709	C-T	HET	INTERGENIC
SBS	Chr5	9481023	C-T	HET	INTERGENIC
SBS	Chr6	11888219	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20630
SBS	Chr6	26006462	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g43270
SBS	Chr6	3019876	A-G	HET	INTERGENIC
SBS	Chr6	6074822	C-G	HET	INTERGENIC
SBS	Chr6	6119160	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	9888732	C-A	HET	INTERGENIC
SBS	Chr7	3140727	C-T	HET	INTERGENIC
SBS	Chr7	9752758	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	15379735	T-A	HET	INTERGENIC
SBS	Chr8	15454819	G-A	HET	INTERGENIC
SBS	Chr8	20714832	G-C	HET	INTERGENIC
SBS	Chr8	21066345	C-T	HET	INTERGENIC
SBS	Chr8	25483100	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40260
SBS	Chr9	16905094	A-T	HOMO	INTERGENIC
SBS	Chr9	19748181	G-A	HOMO	INTERGENIC

Deletions: 123

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	511886	511888	2
Deletion	Chr9	603001	622000	18999	2
Deletion	Chr12	738001	762000	23999	2
Deletion	Chr3	760736	760738	2
Deletion	Chr5	962001	973000	10999
Deletion	Chr11	1061001	1109000	47999	7
Deletion	Chr12	1129867	1129869	2	LOC_Os12g03020
Deletion	Chr11	1750805	1750808	3
Deletion	Chr9	2205001	2218000	12999	3
Deletion	Chr10	2406001	2432000	25999	6
Deletion	Chr9	2836598	2836603	5
Deletion	Chr10	2966129	2966130	1
Deletion	Chr10	3283221	3283222	1
Deletion	Chr10	3409001	3438000	28999	2
Deletion	Chr10	3558676	3558677	1	LOC_Os10g06820
Deletion	Chr5	4380150	4380152	2
Deletion	Chr8	4476001	4503000	26999	2
Deletion	Chr12	4689001	4770000	80999	13
Deletion	Chr9	4762001	4795000	32999	5
Deletion	Chr7	4846001	4888000	41999	5
Deletion	Chr10	5102176	5102177	1
Deletion	Chr1	5188001	5199000	10999	2
Deletion	Chr9	5467019	5467021	2	LOC_Os09g10030
Deletion	Chr10	6200001	6219000	18999	3
Deletion	Chr2	6347001	6363000	15999	LOC_Os02g12540
Deletion	Chr7	6505001	6532000	26999	4
Deletion	Chr9	6645001	6742000	96999	12
Deletion	Chr10	7281001	7319000	37999	4
Deletion	Chr11	8046001	8063000	16999	3
Deletion	Chr12	8059766	8059769	3	LOC_Os12g14190
Deletion	Chr4	8143895	8143916	21
Deletion	Chr1	8469124	8469166	42
Deletion	Chr9	8846809	8846884	75	LOC_Os09g14840
Deletion	Chr6	8926385	8926386	1
Deletion	Chr5	9049120	9049126	6
Deletion	Chr4	9496001	9517000	20999	6
Deletion	Chr5	9707001	9748000	40999	7
Deletion	Chr4	10245001	10266000	20999	4
Deletion	Chr8	10447001	10457000	9999	2
Deletion	Chr9	10595127	10595131	4
Deletion	Chr5	10626001	10679000	52999	6
Deletion	Chr11	10663001	10691000	27999	4
Deletion	Chr1	11017001	11041000	23999	2
Deletion	Chr9	11023001	11053000	29999	2
Deletion	Chr8	11091049	11091091	42	LOC_Os08g18090
Deletion	Chr2	11260001	11296000	35999	6
Deletion	Chr1	11489604	11489605	1
Deletion	Chr11	12115927	12115951	24
Deletion	Chr7	12357344	12357345	1	LOC_Os07g22110
Deletion	Chr5	12626001	12684000	57999	6
Deletion	Chr3	12987001	12998000	10999	2
Deletion	Chr5	13041001	13081000	39999	3
Deletion	Chr4	13261001	13290000	28999	4
Deletion	Chr4	13367753	13367756	3	LOC_Os04g23380
Deletion	Chr2	13508001	13554000	45999	7
Deletion	Chr1	13546364	13546494	130	LOC_Os01g24040
Deletion	Chr5	13746001	13757000	10999	3
Deletion	Chr8	13980721	13980722	1
Deletion	Chr12	14133001	14160000	26999	2
Deletion	Chr9	14411001	14425000	13999	2
Deletion	Chr7	14676001	14702000	25999	4
Deletion	Chr7	14983001	14999000	15999	LOC_Os07g26110
Deletion	Chr2	15041001	15066000	24999	2
Deletion	Chr11	15099566	15099571	5
Deletion	Chr6	15284771	15284772	1
Deletion	Chr3	15342001	15359000	16999	3
Deletion	Chr12	15425789	15425790	1	LOC_Os12g26400
Deletion	Chr11	15468001	15491000	22999	2
Deletion	Chr2	15666166	15666167	1
Deletion	Chr6	16081140	16081226	86	LOC_Os06g28310
Deletion	Chr6	16243537	16243538	1
Deletion	Chr12	16339001	16381000	41999	8
Deletion	Chr12	16456001	16471000	14999	3
Deletion	Chr4	16592001	16630000	37999	5
Deletion	Chr11	16599001	16635000	35999	3
Deletion	Chr6	17316001	17335000	18999	3
Deletion	Chr7	17632100	17632179	79
Deletion	Chr5	17853054	17853062	8
Deletion	Chr12	18026493	18026494	1
Deletion	Chr8	18655001	18669000	13999	3
Deletion	Chr12	19380001	19416000	35999	4
Deletion	Chr1	19414001	19440000	25999	6
Deletion	Chr12	19547001	19582000	34999	5
Deletion	Chr5	19550001	19573000	22999	2
Deletion	Chr6	19576361	19576364	3
Deletion	Chr3	19856370	19856379	9
Deletion	Chr1	20200001	20241000	40999	7
Deletion	Chr4	21020644	21020731	87
Deletion	Chr11	21082001	21114000	31999	5
Deletion	Chr2	21198001	21218000	19999	2
Deletion	Chr3	21237001	21251000	13999	4
Deletion	Chr11	21263663	21263670	7	LOC_Os11g36160
Deletion	Chr8	21888778	21888779	1
Deletion	Chr8	21896242	21896259	17
Deletion	Chr1	22142001	22176000	33999	5
Deletion	Chr9	22474001	22500000	25999	3
Deletion	Chr12	22699001	22718000	18999	5
Deletion	Chr8	23124001	23149000	24999	5
Deletion	Chr12	23366142	23366143	1
Deletion	Chr4	23574527	23574529	2
Deletion	Chr6	24641001	24672000	30999	3
Deletion	Chr2	24840001	24862000	21999	LOC_Os02g41470
Deletion	Chr5	24952707	24952708	1
Deletion	Chr11	25413001	25430000	16999	3
Deletion	Chr12	26027001	26047000	19999	5
Deletion	Chr8	26458001	26481000	22999	LOC_Os08g41910
Deletion	Chr12	26843549	26843552	3
Deletion	Chr7	27254304	27254356	52
Deletion	Chr6	27305001	27312000	6999	2
Deletion	Chr12	27369125	27369128	3
Deletion	Chr4	28711842	28711843	1
Deletion	Chr2	29023001	29041000	17999	4
Deletion	Chr1	29209265	29209270	5	LOC_Os01g50849
Deletion	Chr3	29254001	29268000	13999	LOC_Os03g51140
Deletion	Chr2	29269781	29269786	5
Deletion	Chr3	30120001	30172000	51999	10
Deletion	Chr2	32107079	32107080	1
Deletion	Chr3	32218001	32230000	11999	3
Deletion	Chr1	32858001	32873000	14999	2
Deletion	Chr3	34111605	34111607	2
Deletion	Chr4	34765001	34783000	17999	5
Deletion	Chr1	35875545	35875638	93
Deletion	Chr1	41263001	41295000	31999	LOC_Os01g71640

Insertions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13194366	13194468	103
Insertion	Chr1	16262872	16262926	55	LOC_Os01g29050
Insertion	Chr1	16789293	16789296	4
Insertion	Chr1	1824818	1824820	3
Insertion	Chr1	19594421	19594422	2
Insertion	Chr1	19790101	19790102	2
Insertion	Chr1	19801449	19801450	2
Insertion	Chr1	27002352	27002355	4
Insertion	Chr10	1399960	1399960	1
Insertion	Chr10	8223037	8223037	1
Insertion	Chr11	12096620	12096699	80
Insertion	Chr11	15036076	15036076	1
Insertion	Chr11	15041320	15041320	1
Insertion	Chr11	25817350	25817370	21	LOC_Os11g42860
Insertion	Chr11	8657552	8657552	1
Insertion	Chr12	2051144	2051144	1
Insertion	Chr12	8511698	8511698	1
Insertion	Chr3	17656146	17656146	1
Insertion	Chr4	13874855	13874855	1
Insertion	Chr4	2187024	2187026	3	LOC_Os04g04574
Insertion	Chr4	22656907	22656907	1
Insertion	Chr5	10320538	10320540	3
Insertion	Chr5	11162345	11162345	1
Insertion	Chr5	14924099	14924099	1
Insertion	Chr5	19381816	19381816	1
Insertion	Chr5	29935893	29935893	1
Insertion	Chr5	5579031	5579031	1
Insertion	Chr5	8545779	8545779	1
Insertion	Chr5	8572510	8572598	89
Insertion	Chr5	9802418	9802418	1
Insertion	Chr6	13729281	13729281	1
Insertion	Chr6	23090979	23090979	1	LOC_Os06g38920
Insertion	Chr6	26262126	26262127	2
Insertion	Chr7	3162605	3162710	106
Insertion	Chr9	16059502	16059504	3
Insertion	Chr9	5745756	5745756	1
Insertion	Chr9	6359097	6359098	2
Insertion	Chr9	7385407	7385408	2
Insertion	Chr9	8027536	8027536	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	22371806	22560793
Inversion	Chr9	22371817	22560794

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	792215	Chr3	32597015
Translocation	Chr11	792733	Chr3	32596862
Translocation	Chr5	961702	Chr3	18184303
Translocation	Chr5	986132	Chr3	18181053
Translocation	Chr8	2694143	Chr1	16146351
Translocation	Chr11	4349279	Chr5	3253827
Translocation	Chr11	4349280	Chr5	3253282
Translocation	Chr10	10547429	Chr1	10173686
Translocation	Chr8	18230189	Chr7	2584117	LOC_Os07g05540
Translocation	Chr12	18521500	Chr9	1654381	LOC_Os12g30824
Translocation	Chr11	19748567	Chr6	5893169
Translocation	Chr12	20909708	Chr6	8521025

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