Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14540084	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25650
SBS	Chr1	23100299	G-A	HET	INTRON
SBS	Chr1	23106214	T-C	HET	UTR_3_PRIME
SBS	Chr1	27704996	T-A	HOMO	UTR_3_PRIME
SBS	Chr1	3488135	G-A	HOMO	INTERGENIC
SBS	Chr1	4552145	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g09050
SBS	Chr10	12432172	A-G	HOMO	INTERGENIC
SBS	Chr11	21253718	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g36150
SBS	Chr11	3057520	C-G	HET	INTERGENIC
SBS	Chr12	11713845	T-A	HET	INTERGENIC
SBS	Chr12	11713846	G-A	HET	INTERGENIC
SBS	Chr12	15825352	T-C	HET	INTERGENIC
SBS	Chr12	15943162	T-G	HET	INTERGENIC
SBS	Chr12	8135140	G-C	HET	INTRON
SBS	Chr2	10637639	T-C	HET	INTRON
SBS	Chr2	29843350	T-C	HET	INTERGENIC
SBS	Chr2	31301203	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g51150
SBS	Chr2	481199	C-T	HET	INTERGENIC
SBS	Chr3	18991075	T-A	HOMO	INTERGENIC
SBS	Chr3	29724117	T-G	HET	INTERGENIC
SBS	Chr4	10559496	T-C	HET	INTERGENIC
SBS	Chr4	20648675	G-T	HET	INTERGENIC
SBS	Chr4	25834734	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	6634982	C-T	HET	INTRON
SBS	Chr5	3999999	A-G	HET	INTERGENIC
SBS	Chr7	10290187	C-T	HOMO	INTERGENIC
SBS	Chr7	19005972	G-A	HOMO	INTERGENIC
SBS	Chr7	19893868	C-T	HET	INTERGENIC
SBS	Chr7	21461588	T-A	HOMO	INTERGENIC
SBS	Chr9	14735842	C-T	HOMO	INTERGENIC
SBS	Chr9	5997638	C-A	HET	INTERGENIC
SBS	Chr9	5997639	G-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1891497	1891501	4	LOC_Os12g04440
Deletion	Chr6	4905274	4905275	1	LOC_Os06g09640
Deletion	Chr8	5834366	5834371	5	LOC_Os08g10060
Deletion	Chr4	6349727	6349747	20
Deletion	Chr3	7207841	7207860	19
Deletion	Chr4	9554347	9554348	1
Deletion	Chr11	9811821	9811822	1
Deletion	Chr10	9920749	9920754	5
Deletion	Chr9	11481825	11481827	2
Deletion	Chr6	12349391	12349396	5
Deletion	Chr2	13593794	13593823	29
Deletion	Chr1	13755085	13755098	13	LOC_Os01g24400
Deletion	Chr3	14577639	14577667	28
Deletion	Chr12	15191495	15191496	1
Deletion	Chr12	15683807	15683808	1
Deletion	Chr11	21737319	21737323	4
Deletion	Chr2	21796424	21796431	7
Deletion	Chr2	22902795	22902796	1
Deletion	Chr6	23223845	23223848	3
Deletion	Chr11	26982412	26982413	1
Deletion	Chr1	27706341	27706348	7
Deletion	Chr6	30634224	30634226	2	LOC_Os06g50610
Deletion	Chr4	34921001	34944000	22999	4

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29372464	29372464	1
Insertion	Chr10	6052026	6052026	1
Insertion	Chr11	15026492	15026495	4
Insertion	Chr12	21403209	21403210	2
Insertion	Chr2	9037156	9037233	78
Insertion	Chr2	9197908	9197908	1
Insertion	Chr3	11687382	11687415	34
Insertion	Chr4	15266164	15266164	1
Insertion	Chr4	28619534	28619534	1
Insertion	Chr5	20641218	20641218	1
Insertion	Chr5	29179565	29179565	1
Insertion	Chr6	15960549	15960549	1	LOC_Os06g28100
Insertion	Chr6	8204456	8204467	12	LOC_Os06g14570
Insertion	Chr7	12277170	12277170	1
Insertion	Chr8	16637148	16637186	39
Insertion	Chr9	8299252	8299252	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4332524	Chr1	25576624
Translocation	Chr5	8852674	Chr1	37211262	2
Translocation	Chr5	10026541	Chr4	3220852
Translocation	Chr11	14753919	Chr6	9352429
Translocation	Chr11	15339318	Chr3	15104050
Translocation	Chr12	17507986	Chr7	11859468
Translocation	Chr12	18687091	Chr9	6055960
Translocation	Chr4	34940268	Chr1	7817021
Translocation	Chr4	34944706	Chr1	7817010

Main menu