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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6416883	G-A	HET	INTRON
SBS	Chr1	20969627	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	25871166	A-G	HET	INTERGENIC
SBS	Chr1	29628266	C-T	HOMO	INTERGENIC
SBS	Chr2	9480934	G-A	HOMO	INTRON
SBS	Chr2	9481337	T-C	HOMO	INTRON
SBS	Chr3	263294	C-T	HET	START_GAINED
SBS	Chr3	1886009	T-A	HET	UTR_3_PRIME
SBS	Chr3	24393618	A-G	HET	INTERGENIC
SBS	Chr3	24435734	G-A	HET	INTERGENIC
SBS	Chr3	28977006	T-A	HET	INTERGENIC
SBS	Chr4	3116779	C-T	HET	STOP_GAINED	LOC_Os04g06010
SBS	Chr4	5563269	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	16916832	A-G	HOMO	INTRON
SBS	Chr4	17166970	A-T	HOMO	INTERGENIC
SBS	Chr4	19899232	A-T	HOMO	INTERGENIC
SBS	Chr5	28998351	T-G	HET	INTERGENIC
SBS	Chr6	6968587	G-A	HOMO	INTERGENIC
SBS	Chr6	17926305	C-T	HET	INTERGENIC
SBS	Chr6	25634274	A-G	HOMO	INTRON
SBS	Chr7	11220053	G-A	HET	INTRON
SBS	Chr7	11828990	G-A	HET	INTERGENIC
SBS	Chr7	15466031	A-T	HET	INTERGENIC
SBS	Chr7	21855712	T-A	HET	INTRON
SBS	Chr8	2216268	G-A	HOMO	INTERGENIC
SBS	Chr8	13772807	A-G	HOMO	INTERGENIC
SBS	Chr8	23667308	A-T	HOMO	INTERGENIC
SBS	Chr9	8521780	C-A	HET	INTERGENIC
SBS	Chr9	9531147	C-T	HET	SPLICE_SITE_DONOR	LOC_Os09g15610
SBS	Chr9	18819167	T-G	HET	INTERGENIC
SBS	Chr9	19218618	T-A	HET	INTRON
SBS	Chr10	12654956	A-G	HOMO	INTERGENIC
SBS	Chr10	18213315	C-T	HET	INTERGENIC
SBS	Chr10	22309905	G-C	HET	INTRON
SBS	Chr11	4145536	G-T	HET	INTERGENIC
SBS	Chr11	16232331	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28230
SBS	Chr12	11468824	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	27052831	A-T	HET	SYNONYMOUS_CODING

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	136674	136675	1
Deletion	Chr7	1494241	1494242	1
Deletion	Chr9	1621244	1621246	2
Deletion	Chr1	2998302	2998368	66
Deletion	Chr9	3908184	3908197	13
Deletion	Chr3	3968230	3968233	3
Deletion	Chr10	4063662	4063678	16
Deletion	Chr5	5012877	5012878	1
Deletion	Chr7	5038936	5038938	2
Deletion	Chr11	6458672	6458675	3
Deletion	Chr8	7005098	7005156	58
Deletion	Chr1	7362967	7362969	2
Deletion	Chr8	8223996	8224003	7
Deletion	Chr1	8469463	8469483	20
Deletion	Chr6	9012365	9012366	1
Deletion	Chr4	9331674	9331690	16
Deletion	Chr5	10472043	10472073	30	LOC_Os05g18200
Deletion	Chr1	10741728	10741733	5
Deletion	Chr1	10784994	10785063	69
Deletion	Chr7	12240311	12240313	2
Deletion	Chr12	12424124	12424126	2
Deletion	Chr5	12502764	12503567	803
Deletion	Chr1	13070839	13070840	1
Deletion	Chr8	13892776	13892788	12	LOC_Os08g23070
Deletion	Chr10	14073288	14073289	1
Deletion	Chr4	14628106	14628107	1
Deletion	Chr11	17706471	17706499	28
Deletion	Chr11	20126877	20126878	1
Deletion	Chr11	20236155	20236156	1
Deletion	Chr2	22191428	22191432	4
Deletion	Chr11	23645273	23645274	1
Deletion	Chr6	24605155	24605156	1
Deletion	Chr4	25520189	25520193	4
Deletion	Chr1	25737246	25737247	1
Deletion	Chr6	25802373	25802374	1
Deletion	Chr8	27473212	27473257	45
Deletion	Chr11	28616920	28616921	1
Deletion	Chr4	29879990	29880057	67
Deletion	Chr1	43256191	43256193	2

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	13517628	13517629	2
Insertion	Chr1	7910190	7910191	2
Insertion	Chr2	21645988	21645991	4
Insertion	Chr3	15789344	15789345	2
Insertion	Chr3	21554574	21554670	97
Insertion	Chr4	1898070	1898070	1	LOC_Os04g04120
Insertion	Chr4	2332987	2332987	1
Insertion	Chr4	7452431	7452431	1
Insertion	Chr5	11569354	11569356	3
Insertion	Chr5	19296501	19296607	107
Insertion	Chr6	11367496	11367496	1
Insertion	Chr9	94509	94510	2
Insertion	Chr9	6014066	6014141	76
Insertion	Chr10	8384827	8384828	2
Insertion	Chr11	17184274	17184275	2
Insertion	Chr11	25836102	25836202	101
Insertion	Chr11	26729451	26729543	93
Insertion	Chr12	9852480	9852481	2
Insertion	Chr12	13048871	13048871	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11630753	12019471
Inversion	Chr6	11631521	12019472
Inversion	Chr7	23399647	23624849	LOC_Os07g39020
Inversion	Chr7	23399650	23624856	LOC_Os07g39020

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	5238432	Chr4	12976278
Translocation	Chr8	6341622	Chr3	35852681
Translocation	Chr6	11630755	Chr3	30845961
Translocation	Chr6	11631507	Chr3	30845969
Translocation	Chr12	15592787	Chr11	21832322
Translocation	Chr9	19071659	Chr7	13538265
Translocation	Chr9	19071665	Chr7	13346217
Translocation	Chr7	23767442	Chr1	20739044

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