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Mutant Information

Mutant Name	FN2929-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2929-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16345631	G-T	HET	INTERGENIC
SBS	Chr1	406158	G-C	HET	INTERGENIC
SBS	Chr1	6524639	C-A	HET	INTERGENIC
SBS	Chr10	14454256	G-A	HET	INTERGENIC
SBS	Chr10	16892501	C-A	HET	INTERGENIC
SBS	Chr10	5384461	G-A	HOMO	INTERGENIC
SBS	Chr11	15511945	C-T	HET	INTERGENIC
SBS	Chr11	17678344	A-T	HOMO	INTERGENIC
SBS	Chr11	17989822	G-T	HET	INTERGENIC
SBS	Chr12	22893626	G-T	HET	STOP_GAINED	LOC_Os12g37300
SBS	Chr12	7743719	A-T	HET	INTERGENIC
SBS	Chr2	146247	T-A	HET	INTERGENIC
SBS	Chr2	146248	C-A	HET	INTERGENIC
SBS	Chr2	146249	C-A	HET	INTERGENIC
SBS	Chr2	16623606	C-T	HET	INTRON
SBS	Chr2	27476566	G-T	HET	INTERGENIC
SBS	Chr2	29039243	C-T	HOMO	STOP_GAINED	LOC_Os02g47530
SBS	Chr2	5455872	G-A	HET	INTERGENIC
SBS	Chr2	9074562	T-G	HET	INTERGENIC
SBS	Chr3	12944826	G-A	HET	INTERGENIC
SBS	Chr3	13615927	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23990
SBS	Chr3	17667892	C-T	HOMO	INTERGENIC
SBS	Chr3	21100918	G-A	HOMO	INTERGENIC
SBS	Chr3	21100919	A-T	HOMO	INTERGENIC
SBS	Chr3	25644115	T-C	HET	INTRON
SBS	Chr4	13158801	G-A	HET	INTERGENIC
SBS	Chr4	31725916	C-T	HET	INTERGENIC
SBS	Chr6	11004363	C-T	HOMO	INTERGENIC
SBS	Chr6	6841476	T-A	HOMO	INTERGENIC
SBS	Chr7	11781747	T-C	HET	INTRON
SBS	Chr7	25312166	A-T	HET	INTERGENIC
SBS	Chr7	6624596	A-C	HOMO	INTERGENIC
SBS	Chr8	1137588	G-T	HET	INTERGENIC
SBS	Chr8	15521857	C-G	HET	INTERGENIC
SBS	Chr8	8421144	A-G	HOMO	INTERGENIC
SBS	Chr9	16868978	A-C	HET	INTERGENIC
SBS	Chr9	16880025	T-C	HET	SYNONYMOUS_CODING

Deletions: 92

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	353144	353156	12
Deletion	Chr11	1020001	1047000	26999	6
Deletion	Chr5	1029001	1047000	17999	4
Deletion	Chr11	1203001	1231000	27999	3
Deletion	Chr3	1364795	1364796	1	LOC_Os03g03210
Deletion	Chr5	2031001	2051000	19999	4
Deletion	Chr3	2237470	2237472	2
Deletion	Chr4	2660788	2660789	1
Deletion	Chr4	2806199	2806203	4
Deletion	Chr1	3031000	3031013	13	LOC_Os01g06390
Deletion	Chr9	3591001	3603000	11999	LOC_Os09g07420
Deletion	Chr6	3715001	3757000	41999	7
Deletion	Chr9	4236001	4253000	16999	2
Deletion	Chr3	4618180	4618183	3
Deletion	Chr10	4680001	4732000	51999	10
Deletion	Chr9	4763001	4799000	35999	5
Deletion	Chr3	4783391	4783392	1
Deletion	Chr6	5874216	5874220	4
Deletion	Chr9	5932773	5932857	84
Deletion	Chr9	6121001	6172000	50999	13
Deletion	Chr10	6190001	6219000	28999	4
Deletion	Chr12	6861001	6886000	24999	4
Deletion	Chr5	7548020	7548065	45
Deletion	Chr10	8074001	8088000	13999	2
Deletion	Chr5	8238001	8252000	13999	LOC_Os05g14750
Deletion	Chr1	8347668	8347672	4
Deletion	Chr6	9119001	9156000	36999	6
Deletion	Chr6	9293649	9293650	1
Deletion	Chr4	9503001	9520000	16999	7
Deletion	Chr4	10862001	10886000	23999	4
Deletion	Chr5	10971001	11021000	49999	10
Deletion	Chr9	11017001	11055000	37999	2
Deletion	Chr9	11097001	11110000	12999	3
Deletion	Chr2	11267001	11282000	14999	3
Deletion	Chr11	11307001	11330000	22999	6
Deletion	Chr6	12115001	12149000	33999	8
Deletion	Chr10	12136001	12149000	12999	2
Deletion	Chr7	12260562	12260563	1
Deletion	Chr6	12559001	12570000	10999	2
Deletion	Chr9	12853001	12863000	9999	2
Deletion	Chr6	13429577	13429585	8
Deletion	Chr6	13527335	13527337	2
Deletion	Chr6	14122001	14152000	29999	4
Deletion	Chr11	14156001	14246000	89999	18
Deletion	Chr2	14373001	14386000	12999	2
Deletion	Chr3	14459260	14459268	8
Deletion	Chr2	14704001	14723000	18999	3
Deletion	Chr3	14947373	14947378	5
Deletion	Chr12	15405001	15415000	9999	2
Deletion	Chr5	15518001	15535000	16999	4
Deletion	Chr4	15697810	15697811	1
Deletion	Chr6	15806001	15825000	18999	2
Deletion	Chr12	15864001	15893000	28999	2
Deletion	Chr12	16420229	16420237	8
Deletion	Chr12	16457001	16472000	14999	2
Deletion	Chr6	17029001	17067000	37999	5
Deletion	Chr6	17317001	17339000	21999	3
Deletion	Chr8	17457001	17479000	21999	3
Deletion	Chr1	17597699	17597707	8
Deletion	Chr12	18257001	18279000	21999	3
Deletion	Chr8	18652001	18675000	22999	3
Deletion	Chr8	18843001	18863000	19999	2
Deletion	Chr12	19384001	19420000	35999	4
Deletion	Chr1	19408001	19436000	27999	4
Deletion	Chr5	19553001	19575000	21999	2
Deletion	Chr1	19628001	19648000	19999	4
Deletion	Chr1	20636001	20662000	25999	4
Deletion	Chr3	20699001	20737000	37999	5
Deletion	Chr9	20916001	20936000	19999	2
Deletion	Chr8	21370001	21392000	21999	3
Deletion	Chr12	21735001	21768000	32999	4
Deletion	Chr2	22114001	22146000	31999	7
Deletion	Chr7	22695001	22707000	11999	2
Deletion	Chr3	24076001	24111000	34999	9
Deletion	Chr2	24846001	24859000	12999	LOC_Os02g41510
Deletion	Chr2	25112047	25112064	17
Deletion	Chr2	25167600	25167601	1
Deletion	Chr6	25377846	25377847	1
Deletion	Chr3	25385053	25385054	1
Deletion	Chr7	25901536	25901543	7
Deletion	Chr5	26102001	26149000	46999	7
Deletion	Chr8	26456001	26481000	24999	2
Deletion	Chr11	26620001	26644000	23999	7
Deletion	Chr4	28378001	28389000	10999	LOC_Os04g48210
Deletion	Chr1	28807960	28807969	9
Deletion	Chr6	29260603	29260604	1
Deletion	Chr5	29956352	29956354	2
Deletion	Chr3	30125001	30175000	49999	8
Deletion	Chr1	32286857	32286861	4
Deletion	Chr2	32469048	32469056	8
Deletion	Chr1	40789597	40789598	1
Deletion	Chr1	41084381	41084386	5

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8241519	8241520	2
Insertion	Chr10	6227267	6227296	30
Insertion	Chr11	1032498	1032498	1
Insertion	Chr11	5592439	5592439	1	LOC_Os11g10300
Insertion	Chr3	11157164	11157165	2
Insertion	Chr3	1368044	1368044	1	LOC_Os03g03210
Insertion	Chr3	17832414	17832420	7
Insertion	Chr4	10383840	10383840	1
Insertion	Chr4	13544345	13544345	1
Insertion	Chr4	14826498	14826617	120	LOC_Os04g25570
Insertion	Chr4	2858320	2858321	2
Insertion	Chr6	10048768	10048769	2
Insertion	Chr7	14384250	14384282	33
Insertion	Chr7	14843846	14843846	1
Insertion	Chr7	9373879	9373880	2
Insertion	Chr8	16458425	16458438	14
Insertion	Chr8	16650817	16650817	1
Insertion	Chr8	20962475	20962475	1	LOC_Os08g33570
Insertion	Chr8	28089917	28089917	1	LOC_Os08g44700
Insertion	Chr9	11420116	11420227	112
Insertion	Chr9	22463082	22463093	12
Insertion	Chr9	3159849	3159851	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr11	12004788	12005556
Inversion	Chr4	23501980	23504495
Inversion	Chr4	23502007	23504502

No Translocation

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