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Mutant Information

Mutant Name	FN2932-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2932-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12062189	G-A	HOMO	INTERGENIC
SBS	Chr1	17830214	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32510
SBS	Chr2	6689329	G-A	HOMO	INTERGENIC
SBS	Chr2	7063228	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g13260
SBS	Chr2	7992698	A-T	HOMO	INTRON
SBS	Chr2	9636153	G-A	HET	INTERGENIC
SBS	Chr2	11865621	C-G	HET	INTRON
SBS	Chr2	25106384	G-C	HOMO	INTERGENIC
SBS	Chr3	1824208	A-C	HET	INTRON
SBS	Chr3	3059637	C-T	HET	INTERGENIC
SBS	Chr3	14621758	G-A	HOMO	INTERGENIC
SBS	Chr3	25577455	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	32556952	A-T	HOMO	INTRON
SBS	Chr4	5298299	C-T	HET	INTERGENIC
SBS	Chr4	8868693	T-G	HET	INTERGENIC
SBS	Chr4	12042239	T-G	HET	INTRON
SBS	Chr4	21000673	C-T	HOMO	INTERGENIC
SBS	Chr4	27736758	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g46790
SBS	Chr5	745580	C-T	HOMO	INTERGENIC
SBS	Chr5	1020192	T-A	HET	INTERGENIC
SBS	Chr5	4699852	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08580
SBS	Chr5	5892956	G-T	HET	INTERGENIC
SBS	Chr6	12395000	G-C	HOMO	INTRON
SBS	Chr7	4989466	T-A	HOMO	INTRON
SBS	Chr7	19030598	C-T	HET	INTERGENIC
SBS	Chr7	19030603	G-T	HET	INTERGENIC
SBS	Chr7	27276651	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	6816915	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11620
SBS	Chr8	7461077	A-C	HET	INTERGENIC
SBS	Chr8	27233614	A-G	HOMO	INTERGENIC
SBS	Chr9	3607182	A-T	HET	INTRON
SBS	Chr9	13666770	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	21038131	A-G	HET	START_GAINED
SBS	Chr10	2488891	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05069
SBS	Chr10	2911430	G-C	HET	INTERGENIC
SBS	Chr10	9794387	C-T	HOMO	INTERGENIC
SBS	Chr10	10749526	C-T	HOMO	INTRON
SBS	Chr10	19883996	G-A	HET	INTERGENIC
SBS	Chr11	11561865	C-T	HET	INTERGENIC
SBS	Chr11	13643965	G-T	HET	INTERGENIC
SBS	Chr11	13877673	A-G	HET	INTERGENIC
SBS	Chr11	16584250	G-A	HET	INTERGENIC
SBS	Chr11	23491751	C-T	HET	INTRON
SBS	Chr11	24871543	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	27724232	A-G	HET	UTR_5_PRIME
SBS	Chr12	4130678	G-T	HET	INTERGENIC
SBS	Chr12	4130679	C-T	HET	INTERGENIC
SBS	Chr12	9888309	G-A	HET	INTRON
SBS	Chr12	12614810	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22340
SBS	Chr12	20748693	A-G	HET	INTERGENIC
SBS	Chr12	22030306	C-T	HOMO	INTERGENIC
SBS	Chr12	24276103	T-A	HET	INTERGENIC
SBS	Chr12	24440640	G-A	HET	INTRON

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1123389	1123398	9
Deletion	Chr11	1575576	1575577	1
Deletion	Chr10	3303955	3303956	1	LOC_Os10g06430
Deletion	Chr9	4517139	4517140	1
Deletion	Chr8	6459636	6459638	2
Deletion	Chr8	6648654	6648671	17
Deletion	Chr4	6817255	6817260	5
Deletion	Chr10	8093846	8093893	47
Deletion	Chr8	8556792	8556793	1
Deletion	Chr3	8934233	8934236	3
Deletion	Chr9	9957598	9957604	6
Deletion	Chr11	10628263	10628265	2
Deletion	Chr3	10968548	10968549	1
Deletion	Chr4	13041511	13041527	16	LOC_Os04g22980
Deletion	Chr9	13253001	13453000	199999	34
Deletion	Chr9	13652001	13718000	65999	7
Deletion	Chr2	13693680	13693687	7
Deletion	Chr12	14612028	14612071	43
Deletion	Chr5	15419406	15419407	1
Deletion	Chr6	16378114	16378120	6
Deletion	Chr1	16773079	16773080	1
Deletion	Chr1	16978784	16978785	1
Deletion	Chr7	17490359	17490362	3
Deletion	Chr5	18300186	18300199	13
Deletion	Chr9	18423235	18423243	8
Deletion	Chr9	18632402	18632403	1
Deletion	Chr3	18954854	18954857	3	LOC_Os03g33130
Deletion	Chr12	20563362	20563372	10
Deletion	Chr2	21203001	21217000	13999	2
Deletion	Chr7	21810368	21810371	3
Deletion	Chr4	22838971	22838978	7
Deletion	Chr6	24081390	24081391	1
Deletion	Chr1	24882499	24882552	53
Deletion	Chr2	25861926	25861933	7
Deletion	Chr11	26026452	26026456	4
Deletion	Chr3	26131464	26131470	6	LOC_Os03g46220
Deletion	Chr4	29710723	29710724	1
Deletion	Chr1	31952826	31952832	6

Insertions: 23

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	2106504	2106505	2
Insertion	Chr4	5403167	5403167	1
Insertion	Chr7	4124573	4124574	2
Insertion	Chr1	15240116	15240121	6
Insertion	Chr1	25473002	25473002	1
Insertion	Chr2	32674158	32674158	1
Insertion	Chr4	10085542	10085542	1
Insertion	Chr5	1956146	1956149	4
Insertion	Chr5	10375062	10375062	1
Insertion	Chr5	12246538	12246538	1
Insertion	Chr5	18792768	18792768	1
Insertion	Chr5	22608733	22608754	22
Insertion	Chr6	2106912	2106992	81
Insertion	Chr7	28025065	28025066	2
Insertion	Chr7	28604181	28604181	1
Insertion	Chr8	6844173	6844173	1
Insertion	Chr8	16921452	16921454	3
Insertion	Chr9	8767856	8767856	1
Insertion	Chr9	13801855	13801855	1
Insertion	Chr10	3167516	3167516	1
Insertion	Chr10	8452042	8452042	1
Insertion	Chr10	12592219	12592219	1
Insertion	Chr11	9959543	9959543	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2044503	Chr9	9544773
Translocation	Chr3	3546830	Chr1	4180783	LOC_Os01g08470
Translocation	Chr11	7278190	Chr10	21102618
Translocation	Chr10	9880559	Chr6	4103940
Translocation	Chr8	13399014	Chr7	7949520
Translocation	Chr10	17832413	Chr3	3544356	LOC_Os03g06950

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